Job Description P76145 Confidence 99.68% Date Thu Jan 5 12:19:38 GMT 2012 Rank 42 Aligned Residues 168 % Identity 22% Template c3ocjA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis Resolution 1.39 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.							.	.	80	.	.	.	.
Predicted Secondary structure																																									.																												.	.	.	.	.	.
Query SS confidence																																									.																												.	.	.	.	.	.
Query Sequence		F	S	A	E	R	S	R	P	A	V	E	L	L	A	R	V	P	L	E	N	V	E	Y	V	A	D	L	G	C	G	P	G	N	S	T	A	L	L	Q	.	Q	R	W	P	A	A	R	I	T	G	I	D	S	S	P	A	M	I	A	E	A	R	S	A	L	P	D	.	.	.	.	.	.	C	Q	F	V	E	A	D
Query Conservation																																									.																												.	.	.	.	.	.
Alig confidence																		.																							.																												.	.	.	.	.	.
Template Conservation																		.
Template Sequence		A	T	R	E	R	H	G	H	F	R	R	A	L	Q	R	H	.	L	R	P	G	C	V	V	A	S	V	P	C	G	W	X	S	E	L	L	A	L	D	Y	S	A	C	P	G	V	Q	L	V	G	I	D	Y	D	P	E	A	L	D	G	A	T	R	L	A	A	G	H	A	L	A	G	Q	I	T	L	H	R	Q	D
Template Known Secondary structure																		.			T	T						T	T		T	T						T	S			T	T		T	T								S													T	T	S	T	T	G	G	G
Template Predicted Secondary structure																		.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.													.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	N	W	Q	P	V	Q	A	L	D	L	I	F	A	N	A	S	L	Q	W	L	P	D	H	Y	E	.	.	.	L	F	P	H	L	V	S	L	L	N	P	Q	G	V	L	A	V	Q	M	P	D	N	W	L	E	P	.	.	.	.	.	.	.	.	.	.	.	.	T	H	V	L	M	R	E	V	A	W	E	Q
Query Conservation																													.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	W	K	L	D	T	R	E	G	Y	D	L	L	T	S	N	G	L	N	I	Y	E	P	D	D	A	R	V	T	E	L	Y	R	R	F	W	Q	A	L	K	P	G	G	A	L	V	T	S	F	L	T	P	P	P	A	L	S	P	D	S	P	W	D	X	Q	A	I	D	P	H	D	L	Q	L	Q	Q	L	V	F	T
Template Known Secondary structure		G	G	G					S									S	S	G	G	G																																	T	T	T		T	T					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	P	D	R	G	R	E	P	L	A	G	V	H	A	Y	Y	D	I	L	S	E	A	G	C	E	V	D	I	W	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	I	Q	P	R	W	N	A	L	R	T	H	A	Q	T	R	A	Q	L	E	E	A	G	F	T	D	L	R	F	E
Template Known Secondary structure			T	T			S																	T	T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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