Job Description P76145 Confidence 23.06% Date Thu Jan 5 12:19:38 GMT 2012 Rank 394 Aligned Residues 164 % Identity 13% Template c2zwaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:leucine carboxyl methyltransferase 2; PDBTitle: crystal structure of trna wybutosine synthesizing enzyme2 tyw4 Resolution 1.70 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.									.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query Sequence		Y	L	H	F	S	A	E	R	S	R	P	A	V	E	L	L	A	R	V	P	L	E	N	V	E	Y	V	A	D	L	G	C	G	P	G	N	S	T	A	L	L	Q	Q	R	.	.	.	.	.	.	.	.	W	P	A	A	R	I	T	G	I	D	S	S	P	A	M	I	A	E	A	R	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Alig confidence									.																																					.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		W	L	R	L	F	A	I	.	R	S	R	L	N	S	I	I	E	Q	T	P	Q	D	K	K	I	V	V	V	N	L	G	C	G	Y	D	P	L	P	F	Q	L	L	D	T	N	N	I	Q	S	Q	Q	Y	H	D	R	V	S	F	I	D	I	D	Y	S	D	L	L	K	I	K	I	E	L	I	K	T	I	P	E	L
Template Known Secondary structure									.											S		T	T	S								T		T	T										T	T		G	G	G	G	G	G	S	S	S
Template Predicted Secondary structure									.
Template SS confidence
		86	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
																											73	.	.	.	.	.	.	80	.	.	.	.	.	.	.										.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	L	P	D	C	Q	F	V	E	A	D	I	R	N	.	.	.	.	.	.	.	.	.	W	Q	P	V	Q	A	L	D	L	I	F	A	N	A	S	L	Q	W	L	P	D	H	Y	E	L	F	P	H	L	V	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	I	I	G	L	S	E	D	K	D	Y	V	D	D	S	N	V	D	F	L	T	T	P	K	Y	L	A	R	P	C	D	L	N	D	S	K	M	F	S	T	L	L	N	E	C	Q	L	Y	D	P	N	V	V	K	V	F	V	A	E	V	S	L	A	Y	M	K	P	E	R	S	D	S	I	I	E	A	T	S	K
Template Known Secondary structure					T	T			S	S		S	S		S		T	T							S	S								T	T												T	T	T	T		T	T									S	S	G	G	G	S														T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		L	L	N	P	Q	G	V	L	A	V	Q	M	.	.	.	P	D	N	W	L	E	P	T	H	V	L	M	R	E	V	A	W	E	Q	N	Y	P	D	R	G	R	E	P	L	A	G	V	H	A	Y	Y	D	I	L	S	E	A	G	C	E
Query Conservation														.	.	.
Alig confidence			.	.										.	.	.
Template Conservation			.	.
Template Sequence		M	.	.	E	N	S	H	F	I	I	L	E	Q	L	I	P	K	G	P	F	E	P	F	S	K	Q	M	L	A	H	F	K	R	N	D	S	P	L	Q	S	V	L	K	Y	N	T	I	E	S	Q	V	Q	R	F	N	K	L	G	F	A
Template Known Secondary structure		S	.	.	S	S											T	T		T	T	S													T	T					G	G	G	T			S											T	T
Template Predicted Secondary structure			.	.
Template SS confidence
		245			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions