Job Description P0A794 Confidence 43.82% Date Thu Jan 5 11:05:06 GMT 2012 Rank 248 Aligned Residues 191 % Identity 17% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		22	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.																	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure							.	.	.																				.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.													.	.
Query SS confidence							.	.	.																				.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.													.	.
Query Sequence		T	A	Y	P	D	.	.	.	P	V	Q	A	A	F	I	A	E	Q	A	G	A	D	G	I	T	V	H	.	.	.	.	.	L	R	E	D	R	R	H	I	T	D	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	I	L	R	.	Q	T	L	D	T	R	M	N	L	E	M	A	.	.
Query Conservation							.	.	.																				.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.													.	.
Alig confidence							.	.	.																				.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.													.	.
Template Conservation
Template Sequence		I	G	D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T	T	P	D	I	C	F	E	L	I	A	Q	I	R	A	R	N	P	E	T	P	I	G	L	L	M	Y	A	N
Template Known Secondary structure		T	T	S	S															T	T		S	S										T	T																T	T																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
							75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																																.	.
Query SS confidence		.	.	.	.	.																																																																.	.
Query Sequence		.	.	.	.	.	V	T	E	E	M	L	A	I	A	V	E	T	K	P	H	F	C	C	L	V	P	E	K	R	Q	E	V	T	T	E	G	G	L	D	V	A	G	Q	R	D	K	M	R	D	A	C	K	R	L	A	D	A	G	I	Q	V	S	L	F	I	D	A	D	.	.	E	E	Q	I	K	A	A	A	E	V
Query Conservation		.	.	.	.	.																																																																.	.
Alig confidence		.	.	.	.	.																				.					.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																										.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	Y	A	R	G	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	.	A	D	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	E	S	Q	P	F	V	A	A	A	E	K	F	G	I	Q	P	I	F	I	A	P	P	T	A	S	D	E	T	L	R	A	V	A	Q	L
Template Known Secondary structure					T	T													T							.	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G											T	T									T	T			S
Template Predicted Secondary structure																										.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.															.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		G	A	P	F	I	E	I	H	T	G	C	Y	A	D	A	K	T	D	A	E	Q	A	Q	E	L	A	R	I	A	K	A	A	T	F	A	A	S	L	G	L	K	V	N	A	G	H	G	L	T	Y	H	N	V	K	A	I	A	A	I	P	E	M	H	E	L	N	I	G	H	A	I	I	G	R	A	V	M	T	G	.
Query Conservation																																																																																	.
Alig confidence												.	.	.	.	.	.	.	.															.	.	.	.	.	.																																										.
Template Conservation												.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Sequence		G	K	G	Y	T	Y	L	L	S	R	.	.	.	.	.	.	.	.	A	P	V	H	A	L	L	E	R	L	Q	Q	F	D	.	.	.	.	.	.	A	P	P	A	L	L	G	F	G	I	S	E	P	A	Q	V	K	Q	A	I	E	A	G	A	A	G	A	I	S	G	S	A	V	V	K	I	I	E	T	H	L	D
Template Known Secondary structure				S								.	.	.	.	.	.	.	.													T	T	.	.	.	.	.	.								S	S			S										T	T		S					S	S									T	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.									180	.	.	.	.	.	.	.	.	.	190	.	.	.							.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
						227	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	K	D	A	V	A	E	M	K	R	L	M	L	E	A
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		N	P	A	K	Q	L	T	E	L	A	N	F	T	Q	A	M	K	K	A
Template Known Secondary structure																				T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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