 |
Job Description | P0A794 | Confidence | 84.48% | Date | Thu Jan 5 11:05:06 GMT 2012 |
Rank | 126 | Aligned Residues | 114 |
% Identity | 17% | Template | c3bzjA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:uv endonuclease; |
PDBTitle: uvde k229l
|
Resolution | 2.30 Å |
|
 |
  |   |
104 | . | . | . | . | . | 110 | . | . | . | |
. | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
|
|
|
. | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 140 | . | . | . | . | . | . | . | . | . | |
|
150 | . | . | . | . | . | . | . | . | . | 160 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . |  |  |
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | G | G | L | D | V | A | G | Q | R | . |
D | K | M | R | D | A | C | K | R | L | A | D | A | G | I | Q | V | S | L | . |
. |
. |
. |
F | I | D | A | D | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | Q | I | K | A | A | A | E | V | G | A | . |
. |
P | F | I | E | I | H | T | G | C | Y | A | D | A |
Query Conservation |   |
|
|
|
|
|   |   |   |   |   | . |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|
| . | . | . | . |
|
|
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |
|   |   |   |
|
| . | . |
|   |
|
|
|
|
|
|   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|   |   |   |   |
|
|
|
|   |
|
|   |
|   |
|
|
|   |
|
|   |   |
|
|   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|
|
|   |
|
|   |   |
|   |
Template Sequence |   |
L | F | P | Y | D | W | E | G | A | Y | E | E | E | L | A | R | L | G | A | L | A | R | A | F | G | Q | R | L | S | M | H | P | G | Q | Y | V | N | P | G | S | P | D | P | E | V | V | E | R | S | L | A | E | L | R | Y | S | A | R | L | L | S | L | L | G | A | E | D | G | V | L | V | L | H | L | G | G | A | Y | G | E |
Template Known Secondary structure |   |
T |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |
|
|
| T | T |
|
| T | T |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T |
|  |  |  |  |  |
|
|
|
| S | S |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
71 | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
  |
  |   |
163 | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | |
. | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | T | D | A | E | Q | A | Q | E | L | A | R | I | A | K | A | A | T | F | A | A | S | L | G | L | K | V | N | A | G | H | G | L | T | Y | H | N | V | K | A | I | A | . |
A | I | P | E | M | H | E | L | N | I | G | H | A | I | I |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |
|
|
|   |
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
| . |   |
|   |   |
|   |
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
| . |   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
| . |
|
|   |   |   |   |
|
|   |
|
|
|   |
|   |   |   |   |   |
|
|
|
|
|
|   |   |
|   |   |   |
Template Sequence |   |
K | G | . |
K | A | L | R | R | F | V | E | N | L | R | G | E | E | E | V | L | R | Y | L | A | L | E | . |
N | D | E | R | L | W | N | V | E | E | V | L | K | A | A | E | A | L | G | V | P | V | V | V | D | T | L | H | H | A | L |
Template Known Secondary structure |   |
 |  | . |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  | T | T |  |  |  |  | . |
|
| S | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |
|
|  |  |  |  |  |
| . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
151 | . | |
. | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | |
. | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|