Job Description P0A794 Confidence 91.25% Date Thu Jan 5 11:05:06 GMT 2012 Rank 86 Aligned Residues 191 % Identity 16% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		22	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																		.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.																		.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	Y	P	D	P	V	.	.	.	Q	A	A	F	I	A	E	Q	A	G	A	D	G	I	T	V	H	.	.	.	.	.	L	R	E	D	R	R	H	I	T	D	R	D	V	R	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	T	L	D	T	R	M	N	L	E	M	A	V	T
Query Conservation									.	.	.																		.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																		.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	Y	P	D	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F	E	D	V	L	E	L	S	E	T	L	R	K	E	F	P	D	I	P	F	L	L	M	T	Y	Y	N
Template Known Secondary structure		T	T	S	S															T	T		S									S			T	T	S														T	T																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		77								.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.																																																													.	.
Query SS confidence			.	.	.	.	.	.	.																																																													.	.
Query Sequence		E	.	.	.	.	.	.	.	E	M	L	A	I	A	V	E	T	K	P	H	F	C	C	L	V	P	E	K	R	Q	E	V	T	T	E	G	G	L	D	V	A	G	Q	R	D	K	M	R	D	A	C	K	R	L	A	D	A	G	I	Q	V	S	L	F	I	D	A	D	.	.	E	E	Q	I	K	A	A	A	E	V
Query Conservation			.	.	.	.	.	.	.																																																													.	.
Alig confidence			.	.	.	.	.	.	.															.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	.	I	V	P	D	L	P	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	E	E	L	K	A	V	M	K	K	Y	V	L	S	F	V	P	L	G	A	P	T	S	T	R	K	R	I	K	L	I	C	E	A
Template Known Secondary structure																		T	T					.			T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T									T	T
Template Predicted Secondary structure																								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.															.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		G	A	P	F	I	E	I	H	T	G	C	Y	A	D	A	K	T	D	A	E	Q	A	Q	E	L	A	R	I	A	K	A	A	T	F	A	A	S	L	G	L	K	V	N	A	G	H	G	L	.	T	Y	H	N	V	K	A	I	A	A	I	P	E	M	H	E	L	N	I	G	H	A	I	I	G	R	A	V	M	T	G
Query Conservation																																																		.
Alig confidence													.	.	.	.	.																	.	.	.	.	.	.											.											.	.													.
Template Conservation													.	.	.	.	.																	.	.	.	.	.	.																						.	.													.
Template Sequence		A	D	E	M	T	Y	F	V	S	V	T	.	.	.	.	.	G	Y	E	R	I	K	K	K	V	E	E	Y	R	E	L	C	.	.	.	.	.	.	D	K	P	V	V	V	G	F	G	V	S	K	K	E	H	A	R	E	I	G	S	.	.	F	A	D	G	V	V	V	G	S	A	L	V	.	K	L	A	G	Q	K
Template Known Secondary structure			S	S						S	S		.	.	.	.	.																	.	.	.	.	.	.		S						S	S			S									T	.	.	T	S	S										.					T	T
Template Predicted Secondary structure													.	.	.	.	.																	.	.	.	.	.	.																						.	.													.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.							.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	D	A	V	A	E	M	K	R	L	M	L	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	E	D	L	G	N	L	V	K	E	L	K	E	G
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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