|   |
13 | . | . | . | . | |
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | |
. | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |
Predicted Secondary structure |   |
|
|
|
|  | . |  |  |  |  |  |  |  |  |
|
|
|
|
| . |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | S | T | P | L | . |
V | S | L | D | F | I | V | E | N | S | R | G | E | . |
F | L | L | G | K | R | T | N | R | P | A | Q | G | Y | W | F | V | P | G | G | R | V | Q | K | D | E | T | L | E | A | A | F | E | R | L | T | M | A | E | L | G | L | R | L | P | I | T | A | G | Q | F | Y | G | V | W | Q | H | F | Y | D |
Query Conservation |   |
  |   |   |
|   | . |
|   |
|   |   |
|
|   |   |   |   |
|   | . |
|
|
|   |   |
|   |   |   |   |   |   |
|   |
|   |
|
|
|
|   |
|
|   |
|
|
|   |   |   |
|
|   |
|
|
|   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|
|   |
|
|
|   |   |   |
|
|   |
|
|
|   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |
Template Sequence |   |
R | T | Q | P | V | E | L | V | T | X | V | X | V | T | D | P | E | T | Q | R | V | L | V | E | D | K | V | N | V | P | W | K | A | G | H | S | F | P | G | G | H | V | E | V | G | E | P | C | A | T | A | A | I | R | E | V | F | E | E | T | G | L | R | L | S | G | V | T | F | C | G | T | C | E | W | . |
. |
. |
. |
. |
Template Known Secondary structure |   |
S |
|
|
|  |  |  |  |  |  |  |  |  | B |
| T | T | T |
|
|  |  |  |  |
|
|
|
|
| T | T | T |
| S | B | B |
|
|
|
| B |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  | S |
|
|  |  |  |  |  |  |  |  | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
  |
  |   |
91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
|  |  |  |  |  |
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | N | F | S | G | T | D | F | T | T | H | Y | V | V | L | G | F | R | F | R | V | S | E | E | E | L | L | L | P | D | E | Q | H | D | D | Y | R | W | L | T | S | D | A | L | L | A | S | D | N | V | H | A | N | S | R |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   | . | . |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
. |
. |
. |
F | D | D | D | R | Q | H | R | K | L | G | L | L | Y | R | A | S | N | F | T | G | . |
. |
T | L | K | A | S | A | E | G | Q | L | S | W | L | P | I | T | A | L | T | R | E | N | S | A | A | S | L | P | E |
Template Known Secondary structure |   |
. | . | . |  |
| S | S |
| S | S |  |  |  |  |  |  |  |  |  |
|
|  |  | S | . | . |
|
|
| G | G | G | T | T | T |  |  |  |  |
| G | G | G |
|
| T | T | T | B |
| T | T |  |  |  |
Template Predicted Secondary structure |   |
. | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
|
. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
  |