Job Description P15254 Confidence 99.59% Date Thu Jan 5 11:34:41 GMT 2012 Rank 35 Aligned Residues 203 % Identity 16% Template c3fijD_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 Resolution 2.30 Å

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		1049	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.				.	.	.	.	.	1120	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.
Query SS confidence																																																																				.	.	.
Query Sequence		G	V	N	S	H	V	E	M	A	A	A	F	H	R	A	G	F	D	A	I	D	V	H	M	S	D	L	L	T	G	R	T	G	L	E	D	F	H	A	L	V	A	C	G	G	F	S	Y	G	D	V	L	G	A	G	E	G	W	A	K	S	I	L	F	N	D	.	.	.	R	V	R	D	E	F	A	T	F	F	H
Query Conservation																																																																				.	.	.
Alig confidence																																																																				.	.	.
Template Conservation
Template Sequence		G	I	T	G	Q	Q	R	Y	V	D	A	I	Q	K	V	G	G	F	P	I	A	L	P	I	D	D	P	S	T	A	V	Q	A	I	S	L	V	D	G	L	L	L	T	G	G	Q	D	I	T	P	Q	L	Y	L	E	E	P	S	Q	E	I	G	A	Y	F	P	P	R	D	S	Y	E	I	A	L	V	R	A	A	L
Template Known Secondary structure																T	T											G	G	G							T		S								S				G	G	G	G	T					T	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		1126	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.			.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		R	P	Q	T	L	A	L	G	V	C	N	G	C	Q	M	M	S	N	L	.	.	R	E	L	I	P	G	S	E	L	W	P	R	F	V	R	N	T	S	D	R	F	E	A	R	F	S	L	V	E	V	T	Q	S	P	S	L	L	L	Q	G	M	V	G	S	Q	M	P	I	A	V	S	H	G	E	G	R	V	E	V
Query Conservation																					.	.
Alig confidence																					.	.																																																						.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		D	A	G	K	P	I	F	A	I	C	R	G	X	Q	L	V	N	V	A	L	G	G	T	L	Y	Q	D	I	S	Q	V	E	T	K	A	L	Q	H	L	Q	R	V	D	E	Q	L	G	S	H	T	I	D	I	E	P	T	S	E	L	A	K	H	H	P	N	K	K	L	V	N	S	L	H	H	.	.	.	.	.	.
Template Known Secondary structure				T							T										T	T					S	S	G	G	G	S	S	S						B			S		T	T	S									T	T	S	T	G	G	G	T	S		T	T						B		S	.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		1204	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.			.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		R	D	A	A	H	L	A	A	L	E	S	K	G	L	V	A	L	R	Y	V	D	N	F	G	K	V	T	E	T	Y	P	A	N	P	N	G	S	P	N	G	I	T	A	V	T	T	E	S	G	R	.	.	V	T	I	M	M	P	H	P	E	R	V	F	R	T	V	S	N	S	W	H	P	E	N	W	G	E	D	G
Query Conservation																																																				.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.											.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	I	K	K	L	A	P	S	F	K	V	T	A	R	T	A	D	G	X	.	.	.	I	E	A	V	E	G	D	N	L	P	S	W	Y	L	G	V	Q	W	H	P	E	L	X	F	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	D	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S			T	T								T	T			.	.	.							S	S		S	S						S	S		G	G	G	T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.													.	.	.	.
		1282	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	W	M	R	I	F	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	E	Q	L	F	Q	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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