Job Description P15254 Confidence 100.00% Date Thu Jan 5 11:34:41 GMT 2012 Rank 19 Aligned Residues 305 % Identity 17% Template c2rb9D_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype Resolution 2.00 Å

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		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		S	L	F	K	M	I	K	N	T	F	E	T	T	P	D	H	V	L	S	A	Y	K	D	N	A	A	V	M	E	G	S	E	V	G	R	Y	F	A	D	H	E	T	G	R	Y	D	F	H	Q	E	P	A	H	I	L	M	K	V	E	T	H	.	N	H	P	T	A	I	S	P	W	P	G	A	A	T	G	S	G	G
Query Conservation																																																															.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	M	Q	Q	L	I	N	S	L	F	M	E	A	F	A	N	P	W	L	A	E	Q	E	D	Q	A	R	L	D	L	A	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	E	G	D	R	L	A	F	S	T	D	S	Y	V	I	D	P	L	F	F	P	G	G	N	I	G	K	L	A	I	C	G
Template Known Secondary structure																						T			S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.					S												S	S	S			T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.															.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	R	D	E	G	A	T	G	R	G	A	K	P	K	A	G	L	V	G	F	S	V	S	N	L	R	I	P	G	F	E	Q	P	W	E	E	D	F	G	K	P	E	R	I	V	T	A	L	D	I	M	T	E	G	P	L	G	G	A	A	F	N	N	E	F	G	R	P	A	L	N	G	Y	F	R	T	Y	E	E
Query Conservation
Alig confidence											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		T	A	N	D	V	A	V	S	G	.	.	A	I	P	R	Y	L	S	C	G	F	I	L	E	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	M	E	T	L	K	A	V	V	T	S	M	A	E	T	A	R	T	A	G	I	A	I	V	T	G	D	T	.	K	V	V	Q
Template Known Secondary structure								T	T	T	.	.														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T									.
Template Predicted Secondary structure											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		K	V	N	S	H	N	G	E	E	L	R	G	Y	H	K	P	I	M	L	A	G	G	I	G	N	I	R	A	D	H	.	V	Q	K	G	E	I	N	V	G	A	K	L	V	V	L	G	G	P	A	M	N	I	G	L	G	G	G	A	A	S	S	M	A	S	G	Q	S	D	A	D	L	D	F	A	S	V	Q	R	D
Query Conservation																																.
Alig confidence								.	.	.	.	.	.	.	.	.																.															.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Sequence		R	G	A	A	D	K	.	.	.	.	.	.	.	.	.	L	F	I	N	T	A	G	M	G	A	I	P	T	N	I	H	W	G	A	Q	T	L	T	A	G	D	I	L	L	V	.	.	.	.	S	G	T	L	G	D	H	G	A	T	I	L	N	L	R	E	Q	L	G	L	D	G	E	L	V	S	D	C	A	V	L
Template Known Secondary structure		T	T	S	S	S	S	.	.	.	.	.	.	.	.	.													T	T					G	G	G			T	T						.	.	.	.	S	S		S	S											T	T		S		T	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
		137	.	.	140	.	.										.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.						.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		N	P	E	M	E	R	R	C	Q	E	V	I	D	R	C	W	Q	L	G	D	A	N	P	I	L	F	I	H	D	V	G	A	G	G	L	S	N	A	M	P	E	L	V	S	D	G	G	R	G	G	K	F	E	L	R	E	I	L	S	D	E	P	G	M	S	P	L	E	I	.	.	.	.	.	W	C	N	E	S	Q
Query Conservation																																																																							.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	L	I	Q	T	.	.	.	.	.	.	.	.	.	.	.	L	R	D	I	P	G	V	K	A	L	R	D	A	T	R	G	G	V	N	A	V	V	H	E	F	A	A	A	C	G	C	G	I	E	I	S	E	S	A	L	P	V	K	P	A	V	R	G	V	C	E	L	L	G	L	D	A	L	N	F	A	N	E
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.			S	S	S										T	T														T							T	T	T															T			G	G	G	S			S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.												210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570			.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		E	R	Y	V	L	A	V	A	A	D	Q	L	P	L	F	D	E	L	C	K	R	E	.	.	R	A	P	Y	A	V	I	G	E	A	T	E	E	L	H	L	S	L	H	D	R	H	F	D	N	Q	P	I	D	L	P
Query Conservation																								.	.
Alig confidence																								.	.
Template Conservation
Template Sequence		G	K	L	V	I	A	V	E	R	N	A	A	E	Q	V	L	A	A	L	H	S	H	P	L	G	K	D	A	A	L	I	G	E	V	V	E	R	K	G	V	R	L	A	G	L	Y	G	V	K	R	T	L	D	L	P
Template Known Secondary structure		S								G	G	G										T	S	G	G	G	T	T									S	S		S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions