Job Description P15254 Confidence 99.92% Date Thu Jan 5 11:34:41 GMT 2012 Rank 30 Aligned Residues 272 % Identity 17% Template c1vqvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus Resolution 2.65 Å

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		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		Q	P	K	S	L	F	K	M	I	K	N	T	F	E	T	T	P	D	H	V	L	S	A	Y	K	D	N	A	A	V	M	E	G	S	E	V	G	R	Y	F	A	D	H	E	T	G	R	Y	D	F	H	Q	E	P	A	H	I	L	M	K	.	.	.	.	V	E	T	H	N	H	P	T	A	I	S	P	W	P	G	A
Query Conservation																																																														.	.	.	.
Alig confidence																				.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template Conservation																				.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	F	G	L	I	D	L	I	K	K	T	L	E	S	K	V	I	.	.	.	.	.	.	.	D	D	T	A	P	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	L	L	T	T	D	V	L	N	E	G	V	H	F	L	R	S	Y	I	P	E	A	V	G
Template Known Secondary structure															T		T	T		.	.	.	.	.	.	.			B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											B	T	T	T	B		T	T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.								.	.	.	.	.	30	.																								.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	G	S	G	G	E	I	R	D	E	G	A	T	G	R	G	A	K	P	K	A	G	L	V	G	F	S	V	S	N	L	R	I	P	G	F	E	Q	P	W	E	E	D	F	G	K	P	E	R	I	V	T	A	L	D	I	M	T	E	G	P	L	G	G	A	A	F	N	N	E	F	G	R	P	A	L	N	G	Y
Query Conservation
Alig confidence																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	K	A	I	S	V	N	V	S	D	V	I	A	N	G	.	.	G	L	P	K	W	A	L	I	S	L	N	L	P	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	V	S	Y	V	E	R	F	Y	I	G	V	K	R	A	C	E	F	Y	K	C	E	V	V	G	G	N
Template Known Secondary structure														T	T	T	.	.														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																				T
Template Predicted Secondary structure																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.																					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	T	Y	E	E	K	V	N	S	H	N	G	E	E	L	R	G	Y	H	K	P	I	M	L	A	G	G	I	G	N	I	R	A	D	H	V	Q	K	G	E	I	N	V	G	A	K	L	V	V	L	G	G	P	A	M	N	I	G	L	G	G	G	A	A	S	S	M	A	S	G	Q	S	D	A	D	L	D	F	A
Query Conservation
Alig confidence			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																	.	.	.	.																								.	.	.
Template Conservation			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																	.	.	.	.																								.	.	.
Template Sequence		I	.	S	K	S	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	I	S	V	F	L	V	G	E	T	E	.	R	F	V	G	R	D	G	A	R	L	G	D	S	V	F	V	.	.	.	.	S	G	T	L	G	D	S	R	A	G	L	E	L	L	L	X	E	K	E	E	Y	E	P	.	.	.
Template Known Secondary structure			.				S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	.	S				S	S				T	T						.	.	.	.		S		S	S											T	T		S	S				.	.	.
Template Predicted Secondary structure			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																	.	.	.	.																								.	.	.
Template SS confidence
		120		.	.	.	.	.															.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.					.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.									.
Predicted Secondary structure																											.	.	.	.																																											.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.																																											.	.	.	.	.	.	.	.
Query Sequence		S	V	Q	R	D	N	P	E	M	E	R	R	C	Q	E	V	I	D	R	C	W	Q	L	G	D	.	.	.	.	A	N	P	I	L	F	I	H	D	V	G	A	G	G	L	S	N	A	M	P	E	L	V	S	D	G	G	R	G	G	K	F	E	L	R	E	I	L	S	D	E	P	.	.	.	.	.	.	.	.	G
Query Conservation																											.	.	.	.																																											.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																			.	.	.	.													.																														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																			.
Template Sequence		.	.	.	.	.	.	.	F	E	L	A	L	I	Q	R	H	L	R	P	T	A	R	I	D	Y	V	K	H	I	Q	K	Y	A	N	A	S	X	D	I	S	D	.	G	L	V	A	D	A	N	H	L	A	Q	R	S	G	V	K	I	E	I	L	S	E	K	L	P	L	S	N	E	L	K	X	Y	C	E	K	Y	G
Template Known Secondary structure		.	.	.	.	.	.	.											S					G	G	G									S							S	.													T	T							G	G	G	S													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																			.
Template SS confidence
									177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		537	.	.	540	.	.	.	.	.	.	.	.	.		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		M	S	P	L	E	I	W	C	N	E	S	Q	E	.	R	Y	V	L	A	V	A	A	D	Q	L	P	L	F	D	E	L	C	K	R	E	R	A	P	Y	A	V	I	G	E	A	T	E	E	L	H	L	S	L	H	D	R	H	F	D	N	Q	P
Query Conservation															.
Alig confidence															.															.	.	.	.	.	.	.	.																		.	.
Template Conservation																														.	.	.	.	.	.	.	.																		.	.
Template Sequence		K	N	P	I	E	Y	A	L	F	G	G	E	D	Y	Q	L	L	F	T	H	P	K	E	R	W	N	P	F	.	.	.	.	.	.	.	.	L	D	X	T	E	I	G	R	V	E	E	G	E	G	V	F	V	.	.	D	G	K	K	V	E	P
Template Known Secondary structure										S													G	G	G			S	S	.	.	.	.	.	.	.	.	S										S	S	S					.	.	T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.									.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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