Return to main results Retrieve Phyre Job Id

Job DescriptionP15254
Confidence100.00%DateThu Jan 5 11:34:41 GMT 2012
Rank1Aligned Residues1275
% Identity94%Templatec1t3tA_
PDB info PDB header:ligaseChain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLNAPLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPR
Query Conservation        
  
 
      
                           
       
  

                 
 

Alig confidence 















































































Template Conservation        
  
 
      
                           
       
  

                 
 

Template Sequence  MMEILRGSPALSAFRINKLLARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYGPALSSHTPAGKLLLVTPR
Template Known Secondary structure 


TTT



SS


T

S








S
Template Predicted Secondary structure 































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  PGTISPWSSKATDIAHNCGLQQVNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFALDDAEQLFAHHQPTPVTS
Query Conservation   
           
    
     


    
                  
 
 
 
                 
     
Alig confidence 















































































Template Conservation         
     
    
     


    
                  
 
 
 
                 
     
Template Sequence  PGTISPWSSKATDIAHNCGLQQVDRLERGVAYYIEASTLTAEQWRQVAAELHDRMMETVFSSLTDAEKLFIHHQPAPVSS
Template Known Secondary structure  TT


TT
TT
TT

TTS
TTTSSGGGGGGGG








B
Template Predicted Secondary structure 



































Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190.........200.........210.........220.........230.........240
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  VDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWVIDGEQQPKSLFKM
Query Conservation 
         
       



   
   
   
  


 

  

      







 
   
 


      
   
Alig confidence 















































































Template Conservation 
         
     
 



   

  
   
  


 

  

      




 

 
   
 


     

   
Template Sequence  VDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQPKSLFKM
Template Known Secondary structure 

TTTT



TS

BTS

TTSS
Template Predicted Secondary structure 



































Template SS confidence 















































































   161........170.........180.........190.........200.........210.........220.........230.........240
 
   241........250.........260.........270.........280.........290.........300.........310.........320
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  IKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHETGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEG
Query Conservation 
  
             


 

                         
 

 











 












 
Alig confidence 















































































Template Conservation 
                


 

                         
 

 











 












 
Template Sequence  IKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEG
Template Known Secondary structure 

TT
SSSSS
TTT
B

Template Predicted Secondary structure 



















































Template SS confidence 















































































   241........250.........260.........270.........280.........290.........300.........310.........320
 
   321........330.........340.........350.........360.........370.........380.........390.........400
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  ATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHN
Query Conservation    
 





      

 
       
 
              
      


 


  




 
    
        
Alig confidence 















































































Template Conservation    
 





      

 
       
 
              
      


 


  




 
    
        
Template Sequence  ATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHN
Template Known Secondary structure  TSTT

S



TT


TT






TTS

T


TT
Template Predicted Secondary structure 

















































Template SS confidence 















































































   321........330.........340.........350.........360.........370.........380.........390.........400
 
   401........410.........420.........430.........440.........450.........460.........470.........480
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  GEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERR
Query Conservation        
 



    

              

 

 


 









 

      
      


 


  


Alig confidence 
















































...................











Template Conservation       

 



    

      
       

 

 


 




  ...................


 


  


Template Sequence  GEELRGYHKPIMLAGGIGNIRADHVQKGEIVVGAKLIVLGGPAMNIGFA. . . . . . . . . . . . . . . . . . . SVQRDNPEMERR
Template Known Secondary structure 
SS

GGGSS




TT
S
B
S


T...................T




Template Predicted Secondary structure 






























...................





Template SS confidence 















































































   401........410.........420.........430.........440......... 450.........460.
 
   481........490.........500.........510.........520.........530.........540.........550.........560
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  CQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELREILSDEPGMSPLEIWCNESQERYVLAVAADQL
Query Conservation 
  

   

      
  
 
 





 
  


   
 
  
 

 

 
  

 
 

  






 
 
     
Alig confidence 















































































Template Conservation 
   
 
 

      
  
 
 





 
  


   
 
  
 




 
  

 
 

 







 
 
     
Template Sequence  CQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQL
Template Known Secondary structure  TTGGG



TTTTT
GGGS
BS
TT




SS
GGG
Template Predicted Secondary structure 






























Template SS confidence 















































































   481........490.........500.........510.........520.........530.........540.........550.........560
 
   561........570.........580.........590.........600.........610.........620.........630.........640
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  PLFDELCKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGDALAREGITIADAVKRV
Query Conservation       
         


 

                



   
    
                     

   
  
Alig confidence 















































































Template Conservation       
  
  
   


 

    
 
         



   
    
                     

   
  
Template Sequence  PLFDELCKRERAPYAVIGDATEEQHLSLHDNHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGDALNRADITIADAVKRV
Template Known Secondary structure  T

SS
TTTTT

















TT

Template Predicted Secondary structure 


































Template SS confidence 















































































   561........570.........580.........590.........600.........610.........620.........630.........640
 
   641........650.........660.........670.........680.........690.........700.........710.........720
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  LHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAVTTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEAL
Query Conservation 

 






 
  


  


 

  
 


 
 
 





 
   
  


 
 
 

     

  

  

 


Alig confidence 















































































Template Conservation 

 






 
  


  


 

  
 


 
 
 





 
   
  


 
 
 

     

  

  





Template Sequence  LHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALLDFAASARLAVGEAL
Template Known Secondary structure  TTSTTTS

TTS
S
TTS

STTTT

SSSSTT
S

GGGGGT
Template Predicted Secondary structure 


































Template SS confidence 















































































   641........650.........660.........670.........680.........690.........700.........710.........720
 
   721........730.........740.........750.........760.........770.........780.........790.........800
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  TNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPLSL
Query Conservation 






   
  
  
 

      
     
  

 

  


  




 






             
  



Alig confidence 















































































Template Conservation 






   
  
  
 

   
  
     
  

 

  


  




  





      
         



Template Sequence  TNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPLSL
Template Known Secondary structure  TTSB

SGGG

BTTSTTTTT

B
SSSS


Template Predicted Secondary structure 










































Template SS confidence 















































































   721........730.........740.........750.........760.........770.........780.........790.........800
 
   801........810.........820.........830.........840.........850.........860.........870.........880
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  VISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAIQALVAQRKLL
Query Conservation 



 
 
 

   


 

  
  
 

 

     



   

 
  
   
 
 
 
 

     
  

  


 
Alig confidence 















































































Template Conservation 



 
 
 

   


 

  
  
 

 

     



 
  
 
  
   
 
     

     
  

  


 
Template Sequence  VISAFARVEDVRHTLTPQLSTEDNALLLIDLGKGHNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQALVAARKLL
Template Known Secondary structure  SBGGG


S



SSTTTT



TTSTT


S






TT

S
Template Predicted Secondary structure 
































Template SS confidence 















































































   801........810.........820.........830.........840.........850.........860.........870.........880
 
   881........890.........900.........910.........920.........930.........940.........950.........960
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  AYHDRSDGGLLVTLAEMAFAGHCGIDADIATLGDDRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVS
Query Conservation 









  





 

  

 


          




 
 



       
       

      

 

 
Alig confidence 















































































Template Conservation 









  





 

  
  


          




 
 



       
       

      

 

 
Template Sequence  AWHDRSDGGLLVTLAEMAFAGHCGVQVDIAALGDDHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLADCVHYLGQALA
Template Known Secondary structure 

TTTS
GGG
S



SGGGTT
GGGS
Template Predicted Secondary structure 




























Template SS confidence 















































































   881........890.........900.........910.........920.........930.........940.........950.........960
 
   961........970.........980.........990.........1000.........1010.........1020.........1030.........1040
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  GDRFVITANGQTVFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVAAPYIATGARP
Query Conservation     
 
   
  

   
 

   
   
         
     
               
                  
Alig confidence 















































































Template Conservation     
 
   
  
    
 

   
   
         
     
                                  
Template Sequence  GDRFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLNVKLSFDINEDIAAPYIATGARP
Template Known Secondary structure  SSTTS
T
TT


S

B
SS
TT

TTTTT


Template Predicted Secondary structure 










































Template SS confidence 















































































   961........970.........980.........990.........1000.........1010.........1020.........1030.........1040
 
   1041........1050.........1060.........1070.........1080.........1090.........1100.........1110.........1120
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  KVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTGLEDFHALVACGGFSYGDVLGAGEGWAKSILFNDRVRDEF
Query Conservation 




  



       

  


    
   

      
  
 

   



 

        
  

 
  
    
Alig confidence 















































































Template Conservation 




  



       

  


    
   

      
  
 

   



 

        
  

 
       
Template Sequence  KVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEF
Template Known Secondary structure 
TTB

TT
TS

GGG
S

B
GGGGTTSTTS
Template Predicted Secondary structure 





























Template SS confidence 















































































   1041........1050.........1060.........1070.........1080.........1090.........1100.........1110.........1120
 
   1121........1130.........1140.........1150.........1160.........1170.........1180.........1190.........1200
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  ATFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGR
Query Conservation    
  
 









 
 
  

 
  
 
  


  
 
 
 


     
  
 

 
    




 






 
Alig confidence 












.

































































Template Conservation    
  
 





.


 
 
  

 
  
 
  


  
 
 
 


     
  
 

 
    




 






 
Template Sequence  ETFFHRPQTLALG. VNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGR
Template Known Secondary structure  SSS
.

TTGGGSTT
TT



TTSS



S
GGGTT
TT
SS
Template Predicted Secondary structure 



.
































Template SS confidence 















































































   1121........1130... ......1140.........1150.........1160.........1170.........1180.........1190.........
 
   1201........1210.........1220.........1230.........1240.........1250.........1260.........1270.........1280
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  VEVRDAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPERVFRTVSNSWHPENWGED
Query Conservation 
          
   
 

  
 
  
 

  

 




   





 


 

 
 



    


   
      
Alig confidence 















































































Template Conservation 
          
   
 

  
 
  
 

  

 




   





 


 

 
 



    


   
      
Template Sequence  VEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPERVFRTVANSWHPENWGED
Template Known Secondary structure 
SSTT
B
TTS
B

STTTSSS

GGG
TTSSSSBGGGSSBGGG
SS

TT

SB
Template Predicted Secondary structure 















































Template SS confidence 















































































   1201........1210.........1220.........1230.........1240.........1250.........1260.........1270.........1280
 
   1281........1290.....
Predicted Secondary structure 


Query SS confidence 














Query Sequence  GPWMRIFRNARKQLG
Query Conservation 


   
 

  
  
Alig confidence 














Template Conservation 


   
 

  

 
Template Sequence  SPWMRIFRNARKQLG
Template Known Secondary structure 
TT
Template Predicted Secondary structure 


Template SS confidence 














   1281........1290.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions