Job Description P15254 Confidence 99.97% Date Thu Jan 5 11:34:41 GMT 2012 Rank 23 Aligned Residues 299 % Identity 14% Template c1cliD_ PDB info PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution Resolution 2.50 Å

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		236	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.						.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure														.																																										.	.	.								.	.	.	.	.
Query SS confidence														.																																										.	.	.								.	.	.	.	.
Query Sequence		S	L	F	K	M	I	K	N	T	F	E	T	.	T	P	D	H	V	L	S	A	Y	K	D	N	A	A	V	M	E	G	S	E	V	G	R	Y	F	A	D	H	E	T	G	R	Y	D	F	H	Q	E	P	A	H	.	.	.	I	L	M	K	V	E	T	.	.	.	.	.	H	N	H	P	T	A	I	S	P	W	P
Query Conservation														.																																										.	.	.								.	.	.	.	.
Alig confidence														.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.								.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	V	G	R	I	K	G	V	V	K	K	T	R	R	P	E	V	M	G	G	L	G	G	F	G	A	L	C	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	Q	K	Y	R	E	P	V	L	V	S	G	T	D	G	V	G	T	K	L	R	L	A	M	D	L	K	R	H	D	T
Template Known Secondary structure													T	T			T	T			S	S	S			S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T		S	S												T								T	T			T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3021	.	.	.	.	.	.	.	.	3030	.	.	.	.	.	.	.	.	.	3040	.	.	.	.	.	.	.	.	.	3050																			.	.	.	.	.	.	.	.	.	3060	.	.	.	.	.	.	.	.	.	3070	.	.	.	.	.	.	.	.	.	3080	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	A	T	G	S	G	G	E	I	R	D	E	G	A	T	G	R	G	A	K	P	K	A	G	L	V	G	F	S	V	S	N	L	R	I	P	G	F	E	Q	P	W	E	E	D	F	G	K	P	E	R	I	V	T	A	L	D	I	M	T	E	G	P	L	G	G	A	A	F	N	N	E	F	G	R	P	A	L	N
Query Conservation
Alig confidence																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	I	D	L	V	A	M	C	V	N	D	L	V	V	Q	G	.	.	A	E	P	L	F	F	L	D	Y	Y	A	T	G	K	L	D	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	S	A	V	I	S	G	I	A	E	G	C	L	Q	S	G	C	S	L	V	G
Template Known Secondary structure															G	G	G	T	.	.													S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T
Template Predicted Secondary structure																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3083	.	.	.	.	.	.	3090	.	.	.	.	.	.	.	.	.			3100	.	.	.	.	.	.	.	.	.	3110	.	.	.	.	.	.	.																						.	.	3120	.	.	.	.	.	.	.	.	.	3130	.	.	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		G	Y	F	R	T	Y	E	E	K	V	N	S	H	N	G	E	E	L	R	G	Y	H	K	P	I	M	L	A	G	G	I	G	N	I	R	A	D	H	V	Q	.	K	G	E	I	N	V	G	A	K	L	V	V	L	G	G	P	A	M	N	I	G	L	G	G	G	A	A	S	S	M	A	S	G	Q	S	D	A	D	L
Query Conservation																																										.
Alig confidence																.	.	.	.	.	.	.	.	.																		.																.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.																																		.	.	.	.
Template Sequence		G	E	T	A	E	M	P	G	M	Y	H	G	E	D	.	.	.	.	.	.	.	.	.	Y	D	V	A	G	F	C	V	G	V	V	E	K	S	E	I	I	D	G	S	K	V	S	D	G	D	V	L	I	A	L	G	S	.	.	.	.	S	G	P	H	S	N	G	Y	S	L	V	R	K	I	L	E	V	S	G	C
Template Known Secondary structure								T	T	T			T	T		.	.	.	.	.	.	.	.	.													G	G	G				S	T	T			T	T									.	.	.	.	S	S	S	T	T	S													T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																																		.	.	.	.
Template SS confidence
		3140	.	.	.	.	.	.	.	.	.	3150	.	.	.										.	.	.	.	.	.	3160	.	.	.	.	.	.	.	.	.	3170	.	.	.	.	.	.	.	.	.	3180	.	.	.	.	.	.					.	.	.	3190	.	.	.	.	.	.	.	.	.	3200	.	.	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.					.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.									.
Predicted Secondary structure																			.	.	.	.																																																			.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.																																																			.	.	.	.	.	.	.	.
Query Sequence		D	F	A	S	V	Q	R	D	N	P	E	M	E	R	R	C	Q	.	.	.	.	E	V	I	D	R	C	W	Q	L	G	D	A	N	P	I	L	F	I	H	D	V	G	A	G	G	L	S	N	A	M	P	E	L	V	S	D	G	G	R	G	G	K	F	E	L	R	E	I	L	S	.	.	.	.	.	.	.	.	D
Query Conservation																			.	.	.	.																																																			.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.																																				.															.	.	.	.	.	.	.	.
Template Conservation																																																										.
Template Sequence		D	P	Q	T	T	E	L	D	G	K	P	L	A	D	H	L	L	A	P	T	R	I	Y	V	K	S	V	L	E	L	I	E	K	V	D	V	H	A	I	A	H	L	T	G	G	G	F	W	E	N	I	P	R	V	L	P	.	D	N	T	Q	A	V	I	D	E	S	S	W	Q	W	P	E	V	F	N	W	L	Q	T
Template Known Secondary structure			T	T	T				T	T								S																	S										T	T						S	G	G	G			.	T	T							T	T	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		3207	.	.	3210	.	.	.	.	.	.	.	.	.	3220	.	.	.	.	.	.	.	.	.	3230	.	.	.	.	.	.	.	.	.	3240	.	.	.	.	.	.	.	.	.	3250	.	.	.	.	.	.	.	.	.	3260	.	.		.	.	.	.	.	.	.	3270	.	.	.	.	.	.	.	.	.	3280	.	.	.	.	.
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																.	.
Query SS confidence																			.																																.	.
Query Sequence		E	P	G	M	S	P	L	E	I	W	C	N	E	S	Q	E	R	.	Y	V	L	A	V	A	A	D	Q	L	P	L	F	D	E	L	C	K	R	E	R	A	P	Y	A	V	I	G	E	A	T	.	.	E	E	L	H	L	S	L	H
Query Conservation																			.																																.	.
Alig confidence																			.																																.	.
Template Conservation
Template Sequence		A	G	N	V	E	H	H	E	M	Y	R	T	F	N	C	G	V	G	M	I	I	A	L	P	A	P	E	V	D	K	A	L	A	L	L	N	A	N	G	E	N	A	W	K	I	G	I	I	K	A	S	D	S	E	Q	R	V	V	I
Template Known Secondary structure				T												T	T									G	G	G											T	T															S
Template Predicted Secondary structure
Template SS confidence
		3286	.	.	.	3290	.	.	.	.	.	.	.	.	.	3300	.	.	.	.	.	.	.	.	.	3310	.	.	.	.	.	.	.	.	.	3320	.	.	.	.	.	.	.	.	.	3330	.	.	.	.	.	.	.	.	.	3340	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions