Job Description P37675 Confidence 17.75% Date Thu Jan 5 11:56:49 GMT 2012 Rank 4 Aligned Residues 180 % Identity 13% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	G	A	A	L	M	F	W	L	D	M	F	D	V	Q	I	M	A	Q	T	L	V	N	G	A	D	S	F	S	L	L	A	I	P	F	F	V	L	A	G	E	I	.	.	.	.	.	.	.	.	.	.	.	M	N	A	G	G	L	S	K	R	I	V	D	L	P	M	K	L	V	G	H	K	P	G	G	L	G	Y
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																																																																					.	.	.	.
Template Sequence		S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	.	.	.	.	H	A	L	P	G	G	Q	I	X
Template Known Secondary structure													T	T	T																																				T						T	T		S									.	.	.	.		T	S	T	T
Template Predicted Secondary structure																																																																					.	.	.	.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.					.	.	.	.	.	450	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	L	A	A	M	I	M	A	S	L	S	G	S	A	V	A	D	T	A	A	V	A	A	L	L	V	P	M	M	R	S	A	N	Y	P	V	N	R	A	A	G	L	I	A	S	G	G	I	I	A	P	I	I	P	P	S	I	P	F	I	I	F	G	V	S	S	G	L	S	I	S	K	L	F	M	A	G	I
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.
Template Sequence		G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	.	.	.	.	.	.	.	.	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A
Template Known Secondary structure																												T	T	T	T		S	S																						.	.	.	.	.	.	.	.				G	G	G
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.									.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	G	M	M	M	G	A	T	L	M	L	T	W	W	W	Q	A	S	R	L	N	L	P	R	Q	Q	K	A	T	M	Q	E	I	W	H	S	F	V	S	G	I	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R	F	N	A	R	L	A	R	E	R	R
Template Known Secondary structure																						T
Template Predicted Secondary structure
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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