Job Description P69441 Confidence 99.49% Date Thu Jan 5 12:11:40 GMT 2012 Rank 49 Aligned Residues 190 % Identity 16% Template c3lv8A_ PDB info PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	I	L	L	G	A	P	G	A	G	K	G	T	Q	A	Q	F	I	M	E	K	Y	G	I	P	Q	I	S	T	G	D	M	L	R	A	A	V	K	S	G	S	E	L	G	K	Q	A	K	D	I	M	D	A	G	K	L	V	T	D	E	L	V	I	A	L	V	K	E	R	I	A	Q	E	D	C	R	N	G	F
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	V	I	E	G	L	E	G	A	G	K	S	T	A	I	Q	V	V	V	E	T	L	Q	Q	N	G	I	D	H	I	T	R	T	R	E	P	G	G	T	L	L	A	E	K	L	R	A	L	V	K	E	E	H	P	G	E	E	L	Q	D	I	T	E	L	L	L	V	Y	A	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	T	T	S																T	T									S	S		S	S												S			T	T	S														.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		L	L	D	G	F	P	R	T	I	P	Q	A	D	A	M	K	E	A	G	I	N	V	D	Y	V	L	E	F	D	V	P	D	E	L	I	V	D	R	I	V	G	R	R	V	H	A	P	S	G	R	V	Y	H	V	K	F	.	.	.	N	P	P	K	V	E	G	K	D	D	V	T	G	E	E	L	T	T	R	K	D
Query Conservation																																																										.	.	.
Alig confidence		.	.	.	.	.																																																				.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	A	R	V	Q	L	V	E	N	V	I	K	P	A	L	A	R	G	E	W	V	V	G	D	R	H	D	M	S	S	Q	A	Y	Q	G	G	G	R	Q	I	A	P	S	T	M	Q	S	L	K	Q	T	A	L	G	D	F	K	P	D	L	T	L	Y	L	D	I	D	P	K	L	G	L	E	R	E	L
Template Known Secondary structure		.	.	.	.	.									T							T	T							S									T	T	T	T	T																T	T				S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	E	E	T	V	R	K	R	L	V	E	Y	H	Q	M	T	A	P	L	I	G	Y	Y	S	K	E	A	E	A	G	N	T	K	Y	A	K	V	D	G	T	K	P	V	A	E	V	R	A	D	L	E	K	I	L
Query Conservation
Alig confidence			.	.	.	.	.	.																									.
Template Conservation			.	.	.	.	.	.																									.
Template Sequence		D	.	.	.	.	.	.	R	I	E	K	M	D	I	S	F	F	E	R	A	R	E	R	Y	L	E	L	A	N	S	D	.	D	S	V	V	M	I	D	A	A	Q	S	I	E	Q	V	T	A	D	I	R	R	A	L
Template Known Secondary structure			.	.	.	.	.	.	T	T	T	T	S																				.	T	T						T	T	S
Template Predicted Secondary structure			.	.	.	.	.	.																									.
Template SS confidence
		155							.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions