Job Description P69441 Confidence 97.67% Date Thu Jan 5 12:11:40 GMT 2012 Rank 178 Aligned Residues 195 % Identity 12% Template c3eplA_ PDB info PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism Resolution 3.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	L	L	G	A	P	G	A	G	K	G	T	Q	A	Q	F	I	M	E	K	Y	G	I	P	Q	I	S	T	G	D	M	L	R	A	A	V	K	S	G	S	E	L	G	K	Q	A	K	D	I	M	D	A	G	K	L	V	T	D	E	L	V	I	A	L	V	K	E	R	I	A	Q	E	D	C	R	N	G	F	L
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	I	A	G	T	T	G	V	G	K	S	Q	L	S	I	Q	L	A	Q	K	F	N	G	E	V	I	N	S	D	S	M	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	Y	K	D	I	P	I	I	T	N	K	H	P	L	Q	E	R	E	G	I	P	H	H	V	M	N	H	V	D	W	S	E	E	Y	Y
Template Known Secondary structure								S	S	S													T	T		B						T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S	S	S										G	G	G	G	T	T					S		S		S		S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.													.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.
Query Sequence		L	D	G	F	P	R	T	I	P	Q	A	D	A	M	K	E	A	G	I	N	V	D	Y	V	L	E	F	D	V	P	D	E	L	I	V	D	R	I	V	G	R	R	V	H	A	P	S	G	R	V	.	.	.	.	.	.	.	.	Y	H	V	K	F	N	P	P	K	V	E	G	K	D	D	V	T	G	E	E	L	T
Query Conservation																																																				.	.	.	.	.	.	.	.
Alig confidence								.	.																																											.	.	.	.	.	.	.	.
Template Conservation								.	.
Template Sequence		S	H	R	F	E	T	.	.	E	C	M	N	A	I	E	D	I	H	R	R	G	K	I	P	I	V	V	G	G	T	H	Y	Y	L	Q	T	L	F	N	K	R	V	D	T	K	S	S	E	R	K	L	T	R	K	Q	L	D	I	L	E	S	T	D	P	D	V	I	Y	N	T	L	V	K	C	D	P	D	I	A	T
Template Known Secondary structure								.	.											T	T	T			B					S		T	T	G	G	G	G	G	B	S		S			T	T	T														T		S												S
Template Predicted Secondary structure								.	.
Template SS confidence
		85	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	K	D	D	Q	E	E	T	V	R	K	R	L	V	E	Y	H	Q	M	T	A	P	L	I	G	Y	Y	S	K	E	A	E	A	G	N	T	K	Y	A	K	V	D	G	T	K	P	V	A	E	V	R	A	D	L	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	H	P	N	D	Y	R	R	V	Q	R	M	L	E	I	Y	Y	K	T	G	K	K	P	S	E	T	F	N	E	Q	K	I	T	L	K	F	D	T	L	F	L	W	L	Y	S	K	P	E	P	L	F	Q	R	L	D	D
Template Known Secondary structure		T	S		T	T																S	S								T					B	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions