|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | I | L | L | G | A | P | G | A | G | K | G | T | Q | A | Q | F | I | M | E | K | Y | G | I | P | Q | I | S | T | G | D | M | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | R | A | A | V | K | S | G | S | E | L | G | K | Q | A | K | D | I | M | D | A | G | K | L | V | T | D | E | L | V | I | A | L | V | K | E | R | I |
Query Conservation |   |
|   |
|   |
|   |   |
|
|
|
|
|
|   |
|   |   |
|
|   |   |
|   |   |   |   |
|   |   |   |   |
| . | . | . | . | . | . | . | . | . | . |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |   |   |   |
|
|
|
|
|
|
|   |
|
|
|
|   |
|   |
|
|
|
|
|
|   |   |   |
|   |   |   |
|   |
|
|
|
|
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
Template Sequence |   |
I | F | L | M | G | P | T | A | A | G | K | T | D | L | A | M | A | L | A | D | A | L | P | C | E | L | I | S | V | D | S | A | L | I | Y | R | G | M | D | I | G | T | A | K | P | S | R | E | L | L | A | R | Y | P | H | R | L | I | D | I | R | D | P | A | E | S | Y | S | A | A | E | F | R | A | D | A | L | A | A | M |
Template Known Secondary structure |   |
 |  |  |  |
| S | T | T | S | S |  |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |
|
| T | T | T | T | B | T | T |
|
| T | T | T | T |
|
|
|  |  |  |  |  |  | S |
|  |  | S | S | S |
| B |
| T | T | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
  |
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | Q | E | D | C | R | N | G | F | L | L | D | G | F | P | R | T | I | P | Q | A | D | A | M | K | E | A | G | I | N | V | D | Y | V | L | E | F | D | V | P | D | E | L | I | V | D | R | I | V | G | R | R | V | H | A | P | S | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | V | Y | H | V | K | F | N | P | P | K | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |
|
|
|
|
|
|
|   |
|
|
|   |
|
|
|   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |
|
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | K | A | T | A | R | G | R | I | P | L | L | V | G | G | T | M | L | Y | Y | K | A | L | L | E | G | L | P | Y | T | V | A | Q | L | A | I | A | P | E | Q | R | Q | V | L | H | A | R | I | A | Q | R | F | R | Q | M | L | E | Q | G | F | I | A | E | V | E | A | L | H | A | R | S | D | L | H | A | G | L | P | S | I |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |
|
|
|
| S |  |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  | T |
| T | T |
|
| T | T | S | T | G | G |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . |
  |
  |   |
143 | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . |
Predicted Secondary structure |   |
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | G | K | D | D | V | T | G | E | E | L | T | T | R | K | D | D | Q | E | E | T | V | R | K | R | L | V | E | Y | H | Q | M | T | A | P | L | I | G | Y | Y | S | K | E | A | E | A | G | N | T | K | Y | A | K | V | D | G | T | K | P | V | A | E | V | R | A | D | L | E | K | I |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|
|
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |
|   |   |   |
|
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|   |
|
|
|
|   |   | . | . | . |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
Template Sequence |   |
R | A | V | G | Y | R | Q | V | W | D | Y | L | D | G | K | L | S | Y | A | E | M | T | E | R | G | I | I | A | T | R | Q | L | A | K | R | Q | F | T | W | L | R | S | W | . |
. |
. |
S | H | L | H | W | M | D | S | L | A | G | D | N | L | P | R | A | L | R | Y | L | K | T | V |
Template Known Secondary structure |   |
G | S | T | T |  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| . | . | . | S | S |
|  |  |  |  | T | T |
| S |
|  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . |
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
253 | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | |
|
|
. | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . |
  |