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Job DescriptionP69441
Confidence98.13%DateThu Jan 5 12:11:40 GMT 2012
Rank122Aligned Residues207
% Identity13%Templatec3crqA_
PDB info PDB header:transferaseChain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.... .....40.........50.........60.........70..
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Query Sequence  IILLGAPGAGKGTQAQFIMEKYGIPQISTGDM. . . . . . . . . . LRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERI
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Template Sequence  IFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALAAM
Template Known Secondary structure 
STTSSTTS


TTTTBTT

TTTT


S
SSS
B
TTS


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   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   73......80.........90.........100.........110.........120.........130 .........140..
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Query Sequence  AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSG. . . . . . . . . . RVYHVKFNPPKV
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Template Sequence  AKATARGRIPLLVGGTMLYYKALLEGLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSDLHAGLPSI
Template Known Secondary structure  TT

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S
SSTT
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TTSTGG
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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   143......150.........160.........170.........180.........190.........200.........210..
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Query Sequence  EGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKI
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Template Sequence  RAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSW. . . SHLHWMDSLAGDNLPRALRYLKTV
Template Known Secondary structure  GSTTTTSS
T
...SS
TT
S
T
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   253......260.........270.........280.........290..... ....300.........310.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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