Job Description P69441 Confidence 99.47% Date Thu Jan 5 12:11:40 GMT 2012 Rank 54 Aligned Residues 204 % Identity 16% Template c3akcA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8 Resolution 1.65 Å

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		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		M	R	.	.	I	I	L	L	G	A	P	G	A	G	K	G	T	Q	A	Q	F	I	M	E	K	Y	G	I	P	Q	I	S	T	G	D	M	L	R	A	A	V	K	S	G	S	E	L	G	K	Q	A	K	D	I	M	D	A	G	K	L	V	T	D	E	L	V	I	A	L	V	K	E	R	I	A	Q	E	D	C	R
Query Conservation				.	.
Alig confidence				.	.																																																																.
Template Conservation																																																																					.
Template Sequence		M	R	G	I	V	T	I	D	G	P	S	A	S	G	K	S	S	V	A	R	R	V	A	A	A	L	G	V	P	Y	L	S	S	G	L	L	Y	R	A	A	A	F	L	A	L	R	A	G	V	D	P	G	D	E	E	G	L	L	A	L	L	E	G	L	G	V	R	.	L	L	A	Q	A	E	G	N	R	V	L	A
Template Known Secondary structure				S							S	T	T	S	S													T																					T			T	T													T			.					T	T
Template Predicted Secondary structure																																																																					.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	F	L	L	D	G	F	P	R	T	I	P	Q	A	D	A	M	K	E	A	G	I	N	V	D	Y	V	L	E	F	D	V	P	D	E	L	I	V	D	R	I	V	G	R	R	V	H	A	P	S	G	R	V	Y	H	V	K	F	N	P	P	K	V	E	G	K	D	D	V	T	G	E	E	L	T	T	R	K	D
Query Conservation
Alig confidence																									.	.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		D	G	E	D	L	T	S	F	L	H	T	P	E	V	D	R	V	V	S	A	V	A	R	.	.	.	.	.	L	P	G	V	R	A	W	V	N	R	R	L	K	E	V	P	P	P	F	V	A	E	G	R	D	M	G	T	A	V	F	P	E	A	A	H	K	F	Y	L	T	A	S	P	E	V	R	A	W	R	R	A
Template Known Secondary structure		T	T				G	G	G	S	S	S												T	.	.	.	.	.														T	S		S							S	S							T	T		S
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	E	E	T	V	R	K	R	L	V	E	Y	H	Q	M	T	A	P	L	I	G	Y	Y	S	K	E	A	E	A	G	N	T	K	Y	A	K	V	D	G	T	K	P	V	A	E	V	R	A	D	L	E	K	I	L
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		R	.	.	.	E	R	P	Q	A	Y	E	E	V	L	R	D	L	L	R	R	D	E	R	D	K	A	Q	S	A	P	A	P	D	A	L	V	L	D	T	G	G	M	T	L	D	E	V	V	A	W	V	L	A	H	I
Template Known Secondary structure		T	.	.	.	T	S	S	S																T	G	G	G					T	T							T	T
Template Predicted Secondary structure			.	.	.
Template SS confidence
		155				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions