Job Description P69441 Confidence 99.04% Date Thu Jan 5 12:11:40 GMT 2012 Rank 85 Aligned Residues 123 % Identity 17% Template c1ly1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:polynucleotide kinase; PDBTitle: structure and mechanism of t4 polynucleotide kinase Resolution 2.00 Å

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		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure				.	.																							.
Query SS confidence				.	.																							.
Query Sequence		M	R	.	.	I	I	L	L	G	A	P	G	A	G	K	G	T	Q	A	Q	F	I	M	E	K	Y	.	G	I	P	Q	I	S	T	G	D	M	L	R	A	A	V	K	S	G	S	E	L	G	K	Q	A	K	D	I	M	D	A	G	K	L	V	T	D	E	L	V	I	A	L	V	K	E	R	I	A	Q	E	D	C
Query Conservation				.	.																							.
Alig confidence				.	.																							.
Template Conservation
Template Sequence		M	K	K	I	I	L	T	I	G	C	P	G	S	G	K	S	T	W	A	R	E	F	I	A	K	N	P	G	F	Y	N	I	N	R	D	D	Y	R	Q	S	I	M	A	H	E	E	R	D	E	Y	K	Y	T	K	K	K	E	G	I	V	T	G	M	Q	F	D	T	A	K	S	I	L	Y	G	G	D	S	V	K	G
Template Known Secondary structure												T	T	S	S												S	T	T														T	T	S			G	G	G																								T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	G	F	L	L	D	G	F	P	R	T	I	P	Q	A	D	A	M	K	E	A	G	I	N	V	D	Y	V	L	E	F	D	V	P	D	E	L	I	V	D	R	I	V	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	I	S	D	T	N	L	N	P	E	R	R	L	A	W	E	T	F	A	K	E	Y	G	W	K	V	E	H	K	V	F	D	V	P	W	T	E	L	V	K	R	N	S	K	R
Template Known Secondary structure						S				S															T																				T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions