Job Description P06972 Confidence 100.00% Date Thu Jan 5 10:59:37 GMT 2012 Rank 1 Aligned Residues 314 % Identity 27% Template d1l7va_ SCOP info ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC Resolution 3.20

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	R	I	A	L	F	P	A	L	L	L	A	L	L	V	I	V	A	T	A	L	T	W	M	N	F	S	Q	A	L	P	R	S	Q	W	A	Q	A	A	W	S	P	D	I	D	V	I	E	Q	M	I	F	H	Y	S	L	L	P	R	L	A	I	S	L	L	V	G	A	G	L	G	L	V	G	V	L	F	Q	Q
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.
Template Sequence		Q	Q	R	Q	N	I	R	W	L	L	C	L	S	V	L	X	L	L	A	L	L	L	S	L	C	A	G	E	Q	W	I	S	P	G	D	W	F	.	.	.	.	.	.	.	.	T	P	R	G	E	L	F	V	W	Q	I	R	L	P	R	T	L	A	V	L	L	V	G	A	A	L	A	I	S	G	A	V	X	Q	A
Template Known Secondary structure																											B	S	S	S	B			S	G	G	G	S	.	.	.	.	.	.	.	.	S	T	T	T	T	T					T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.									.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		V	L	R	N	P	L	A	E	P	T	T	L	G	V	A	T	G	A	Q	L	G	I	T	V	T	T	L	W	A	I	P	G	A	M	A	S	Q	F	.	A	A	Q	A	G	A	C	V	V	G	L	I	V	F	G	V	A	W	G	K	R	L	S	P	V	T	L	I	L	A	G	L	V	V	S	L	Y	C	G	A	I
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		L	F	E	N	P	L	A	E	P	G	L	L	G	V	S	N	G	A	G	V	G	L	I	A	A	V	L	L	G	Q	G	Q	L	P	N	W	A	L	G	L	C	A	I	A	G	A	L	I	I	T	L	I	L	L	R	F	A	R	R	H	L	S	T	S	R	L	L	L	A	G	V	A	L	G	I	I	C	S	A	L
Template Known Secondary structure				T		T	T			T	T	T	T	T															T	S		T	T																												T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		N	Q	L	L	V	I	F	.	H	H	D	Q	L	Q	S	M	F	L	W	S	T	G	T	L	T	Q	T	D	W	G	G	V	E	R	L	W	P	Q	L	L	G	G	V	M	L	T	L	L	L	L	R	P	L	T	L	M	G	L	D	D	G	V	A	R	N	L	G	L	A	L	S	L	A	R	L	A	A	L	S	L
Query Conservation									.
Alig confidence									.																															.
Template Conservation																																								.
Template Sequence		X	T	W	A	I	Y	F	S	T	S	V	D	L	R	Q	L	X	Y	W	X	X	G	G	F	G	G	V	D	W	R	Q	S	W	L	X	L	A	L	.	I	P	V	L	L	W	I	C	C	Q	S	R	P	X	N	X	L	A	L	G	E	I	S	A	R	Q	L	G	L	P	L	W	F	W	R	N	V	L	V	A	A
Template Known Secondary structure																						T				T	T			G	G	G								.																											T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	V	I	S	A	L	L	V	N	A	V	G	I	I	G	F	I	G	L	F	A	P	L	L	A	K	M	L	G	A	R	R	L	L	P	R	L	M	L	A	S	L	I	G	A	L	I	L	W	L	S	D	Q	I	I	L	W	L	T	R	V	W	M	E	V	S	T	G	S	V	T	A	L	I	G	A	P	L	L
Query Conservation
Alig confidence																																																																.
Template Conservation																																																																.
Template Sequence		T	G	W	X	V	G	V	S	V	A	L	A	G	A	I	G	F	I	G	L	V	I	P	H	I	L	R	L	C	G	L	T	D	H	R	V	L	L	P	G	C	A	L	A	G	A	S	A	L	L	L	A	D	I	V	A	R	L	A	L	A	A	.	A	E	L	P	I	G	V	V	T	A	T	L	G	A	P	V	F
Template Known Secondary structure																		S	S	S	S									T	T			S																										S		S	S	.	S
Template Predicted Secondary structure																																																																.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	L	L	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	W	L	L	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions