Job Description P06972 Confidence 9.29% Date Thu Jan 5 10:59:37 GMT 2012 Rank 40 Aligned Residues 334 % Identity 10% Template c3nd0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter Resolution 3.20 Å

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		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	L	I	L	A	G	L	V	V	S	L	Y	C	G	A	I	N	Q	L	L	V	I	F	H	H	D	Q	L	Q	S	M	F	L	W	S	T	G	T	L	T	Q	T	D	W	G	G	V	E	R	L	W	P	Q	L	L	G	G	V	M	L	T	L	L	L	L	R	P	L	T	L	M	G	L	D	D	G	V	A	R	.
Query Conservation																																																																																	.
Alig confidence																										.																																																							.
Template Conservation																										.
Template Sequence		R	T	L	V	A	A	I	V	V	G	L	I	T	G	V	L	G	A	G	F	K	S	A	V	.	N	N	M	L	Q	W	R	S	Q	L	A	Q	I	L	A	P	I	P	P	L	A	W	L	V	T	A	L	I	S	G	G	M	V	A	L	S	F	W	L	M	K	R	F	A	P	D	T	S	G	S	G	I	P	Q	I
Template Known Secondary structure																										.														S	T	T	S		T																						T	T	T		G	G	G	S	B		S
Template Predicted Secondary structure																										.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
								224	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.	.	.	.											.	.																										.												.
Query SS confidence		.	.	.	.	.	.											.	.																										.												.
Query Sequence		.	.	.	.	.	.	N	L	G	L	A	L	S	L	A	R	.	.	L	A	A	L	S	L	A	I	V	I	S	A	L	L	V	N	A	V	G	I	I	G	F	I	G	.	L	F	A	P	L	L	A	K	M	L	G	.	A	R	R	L	L	P	R	L	M	L	A	S	L	I	G	A	L	I	L	W	L	S	D	Q
Query Conservation		.	.	.	.	.	.											.	.																										.												.
Alig confidence		.	.	.	.	.	.											.	.																										.												.
Template Conservation
Template Sequence		E	G	H	L	E	G	K	L	P	L	V	W	Q	R	V	L	P	I	K	L	V	G	G	F	L	S	L	G	A	G	M	L	A	G	F	E	G	P	T	I	Q	M	G	G	S	I	G	Q	M	T	G	G	W	F	K	A	T	Q	E	N	Q	R	I	L	I	A	V	G	A	G	A	G	L	A	T	A	F	N	A	P
Template Known Secondary structure					T	T	S	S	S																					T	T		S			T																			T	T																							T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.							.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.
Query Sequence		I	I	L	W	L	T	R	V	W	M	E	V	S	T	G	.	.	.	.	.	.	S	V	T	A	L	I	G	A	P	L	L	L	W	L	L	P	R	L	R	S	I	S	A	P	D	M	K	V	N	D	R	V	A	A	E	R	Q	H	V	L	A	F	A	L	A	G	G	V	L	L	L	M	A	V	V	V	A	L	S
Query Conservation																	.	.	.	.	.	.
Alig confidence											.						.	.	.	.	.	.
Template Conservation											.
Template Sequence		L	A	G	V	A	L	I	G	E	.	E	M	H	P	R	F	R	S	Q	T	L	A	Y	H	S	L	L	F	G	C	V	M	A	T	I	I	L	R	M	I	R	G	Q	S	A	I	I	S	L	T	E	F	K	R	V	P	L	D	S	L	W	M	F	I	I	L	G	I	L	F	G	V	M	G	Y	T	F	N	R	G
Template Known Secondary structure										S	.	S	S					S	S			T	T																			T		S	S		S	S			T	T						G	G	G
Template Predicted Secondary structure											.
Template SS confidence
		189	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.												.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																									.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	R	D	A	H	G	W	T	W	A	S	G	A	L	L	E	D	L	M	P	W	R	.	W	P	R	I	M	A	A	L	F	A	G	V	M	L	A	V	A	G	.	.	.	.	.	.	.	.	.	.	.	C	I	I	Q	R	L	T	G	N	P	M	A	S	P	E	V	L	G	I	S	S	G	A	A	F	G	V
Query Conservation																									.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.												.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	F	K	V	L	D	W	F	D	R	L	P	P	L	A	T	K	W	K	G	F	L	L	G	S	I	I	G	I	L	S	L	F	P	L	P	L	T	D	G	G	D	N	A	V	L	W	A	F	N	S	Q	S	H	F	S	T	L	I	L	V	F	C	G	R	F	L	L	T
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.									T																					T	T	S	S	S	S		S	S	S	S								T	T	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268												.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		436	.	.	.	440			.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		V	L	M	L	F	.	.	L	V	P	G	N	A	F	G	W	L	L	P	A	G	S	L	G	A	A	V	T	L	L	I	I	M	I	A	A	G	R	G	G	F	S	P	H	R	M	L	L	A	G	M	A	L	S	T	A	F	T	M	L	L
Query Conservation							.	.
Alig confidence							.	.																																									.	.	.
Template Conservation																																																	.	.	.
Template Sequence		L	I	C	Y	G	S	G	A	I	G	G	I	F	A	P	M	L	G	I	A	S	I	V	S	V	A	M	A	R	H	F	H	L	L	F	P	S	Q	I	P	E	P	A	V	M	A	I	.	.	.	A	G	M	G	A	L	V	A	A	T	V
Template Known Secondary structure							T	T		B			S																								T	T	T		S	S	T						.	.	.		T	T	S
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions