Job Description P06972 Confidence 38.01% Date Thu Jan 5 10:59:37 GMT 2012 Rank 5 Aligned Residues 264 % Identity 11% Template c3k3gA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		P	R	L	A	I	S	L	L	V	G	A	G	L	G	L	V	G	V	L	F	Q	Q	V	L	R	N	P	L	A	E	P	T	T	L	G	V	A	T	G	A	Q	L	G	I	T	V	T	T	L	W	A	I	P	G	A	M	A	S	Q	F	A	A	Q	A	G	A	C	V	V	G	L	I	V	F	G	V	A	W	.	.
Query Conservation																																																																																.	.
Alig confidence																													.											.	.	.																																						.	.
Template Conservation																													.											.	.	.
Template Sequence		T	T	L	G	V	C	A	V	L	G	T	A	A	S	T	L	T	A	Q	L	L	G	V	D	K	P	L	.	V	R	A	G	L	F	G	F	N	G	.	.	.	T	L	A	G	I	A	L	P	F	F	F	N	Y	E	P	A	M	L	G	Y	V	A	L	N	G	A	F	T	T	I	I	M	A	S	L	L	N	F	L
Template Known Secondary structure																							T						.			T	T	T	T	T				.	.	.											B				T	T
Template Predicted Secondary structure																													.											.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
			138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.														.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure		.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	G	K	R	L	S	P	V	T	L	I	L	A	G	L	V	V	S	L	Y	C	G	A	I	N	Q	L	L	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	F	H	H	D	Q	L	Q	S	M	F	L	W	S	T	G	T	L	T	Q	T	D	W	G	G	V	E	R	L	W	P	Q	L	L	G	G	V	M
Query Conservation		.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	W	G	V	P	A	L	T	A	P	F	V	L	A	T	W	L	L	M	F	G	V	Y	K	L	S	L	F	H	P	G	A	L	I	A	P	A	L	P	S	V	D	M	G	T	V	T	G	R	T	F	M	E	G	L	F	K	G	V	G	E	V	M	F	Q	D	N	I	V	T	G	V	I	F	V	V	A	I	L
Template Known Secondary structure		G	G	G	T				T	T												G	G	G	G	T		T	T	S		B		T	T																												G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		204	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		L	T	L	L	L	.	.	L	R	P	L	T	L	M	G	L	D	D	G	V	A	R	N	L	G	L	A	L	S	L	A	R	L	A	A	L	S	L	A	I	V	I	S	A	L	L	V	N	A	V	G	I	I	G	F	I	G	L	F	A	P	L	L	A	K	M	L	G	A	R	R	L	L	P	R	L	M	L	A	S
Query Conservation							.	.
Alig confidence							.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	S	R	I	S	A	L	F	A	V	I	G	S	L	V	G	L	C	T	A	L	I	M	H	S	P	E	T	P	V	R	L	G	L	Y	G	F	N	S	V	L	C	G	I	A	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	F	F	Y	L	N	I	R	T	F	L	Y	A
Template Known Secondary structure																									T	T								T	T	T	T	T											T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	B			S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.																			.	.	.	.	.	.	260	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	A	L	I	L	W	L	S	D	Q	I	I	L	W	L	T	R	V	W	M	E	V	S	T	G	S	V	T	A	L	I	G	A	P	L	L	L	W	L	L	P	R	L	R	S	I	S	A	P	D	M	K	V	N	D	R	V	A	A	E	R	Q	H
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		L	G	C	M	V	L	G	A	I	A	T	G	A	F	S	V	L	L	S	P	.	I	G	M	P	A	L	T	W	P	F	I	V	V	T	W	L	F	L	F	A	G	S	M	F	R	N	I	A	Q	V	P	T	E	K	A	G	T	P	E	D	N	L	R	S
Template Known Secondary structure																			T	G	G	.	G	T				T	T														G	G	G		T	T	S		B			T	T	T
Template Predicted Secondary structure																						.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions