Job Description P0AEK0 Confidence 96.96% Date Thu Jan 5 11:23:32 GMT 2012 Rank 44 Aligned Residues 131 % Identity 18% Template c2vwkA_ PDB info PDB header:dna replication Chain: A: PDB Molecule:dna polymerase; PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant Resolution 2.6 Å

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		2	.	.	.	.	.	.	.	10	.	.	.							.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure														.	.	.	.	.	.																																																												.	.	.
Query SS confidence														.	.	.	.	.	.																																																												.	.	.
Query Sequence		L	R	I	I	D	T	E	T	C	G	L	Q	.	.	.	.	.	.	G	G	I	V	E	I	A	S	V	D	V	I	D	G	K	I	V	N	P	M	S	H	L	V	R	P	D	R	P	I	S	P	Q	A	M	A	I	H	R	I	T	E	A	M	V	A	D	K	P	W	I	E	D	V	I	P	H	Y	Y	.	.	.
Query Conservation														.	.	.	.	.	.																																																												.	.	.
Alig confidence														.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	A	F	D	I	E	T	L	Y	H	E	G	E	K	F	A	E	G	P	I	L	M	I	S	Y	A	D	E	E	G	A	R	V	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	R	N	I	D	L	P	Y	V	D	V	V	S	T	E	K	E	M	I	K	R	F	L	K	V	V
Template Known Secondary structure													T	T	S		T	T		S										S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					T	T					S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.																			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
					73	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.																																.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	G	S	E	W	Y	V	A	H	N	A	.	S	F	D	R	R	V	L	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	G	E	W	I	C	T	M	K	L	A	R	R	L	W	P	G	I	K	Y	S	N	M	A	L
Query Conservation		.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																																								.
Template Sequence		K	E	K	D	P	D	V	L	I	T	Y	N	G	D	N	F	A	F	A	Y	L	K	K	R	S	E	K	L	G	V	K	F	I	L	G	R	E	G	S	E	P	K	I	Q	R	M	G	D	R	F	A	V	E	V	K	G	R	I	H	F	D	L	Y	P	V	I	R	R	T	I	.	N	L	P	T	Y	T	L	E	A
Template Known Secondary structure							S					S	S	T	T	T	T													T						S	T	T	S									T	T							T	T	S													S	.			S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.	.								.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.
Query Sequence		Y	K	T	R	K	L	N	V	Q	T	P	P	G	L	.	.	.	.	.	.	.	.	.	H	H	H	R	A	.	.	.	.	.	.	.	L	Y	D	C	Y	I	T	A	A	L	L	I	D	I	M
Query Conservation																.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	E	A	I	F	G	Q	P	K	E	K	V	Y	A	E	E	I	A	Q	A	W	E	T	G	E	G	L	E	R	V	A	R	Y	S	M	E	D	A	K	V	T	Y	E	L	G	K	E	F	F
Template Known Secondary structure						T	T		S																T		T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions