Job Description P0AEK0 Confidence 97.87% Date Thu Jan 5 11:23:32 GMT 2012 Rank 32 Aligned Residues 148 % Identity 12% Template c2gv9B_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase Resolution 2.68 Å

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		2	.	.	.	.	.	.	.														10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																	.																					.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																	.																					.	.	.
Query Sequence		L	R	I	I	D	T	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	L	Q	G	G	I	V	E	I	A	S	V	D	V	I	.	D	G	K	I	V	N	P	M	S	H	L	V	R	P	D	R	P	I	S	P	.	.	.	Q	A	M	A	I	H	R	I	T	E	A	M	V	A	D	K	P	W	I
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																	.																					.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																	.																					.	.	.
Template Conservation
Template Sequence		L	M	C	F	D	I	E	C	K	A	G	G	E	D	E	L	A	F	P	V	A	G	H	P	E	D	L	V	I	Q	I	S	C	L	L	Y	D	L	S	T	T	A	L	E	H	V	L	L	F	S	L	G	S	C	D	L	P	E	S	H	L	N	E	L	A	A	R	G	L	P	T	P	V	V	L	E	F	D	S	E
Template Known Secondary structure													S	S		T	T	S				T	T	S	T	T	S												T	T	T												S															T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		65	.	.	.	.	70	.	.							.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.																																									.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	V	I	P	H	Y	Y	.	.	.	.	.	.	G	S	E	W	Y	V	A	H	N	A	.	S	F	D	R	R	V	L	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	G	E	W	I
Query Conservation										.	.	.	.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	M	L	L	A	F	M	T	L	V	K	Q	Y	G	P	E	F	V	T	G	Y	N	I	I	N	F	D	W	P	F	L	L	A	K	L	T	D	I	Y	K	V	P	L	D	G	Y	G	R	M	N	G	R	G	V	F	R	V	W	D	I	G	Q	S	H	F	Q	K	R	S	K	I	K	V	N	G	M	V	N	I
Template Known Secondary structure																		S					S	S	T	T	T	T											T	T	T					T	T	S	S	S	B	S	S	S								S	S			T	T	S							B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.								.	.	.											.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																						.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.
Query Sequence		C	T	M	K	L	A	R	R	L	W	P	G	I	K	Y	S	N	M	A	L	Y	K	T	R	K	L	N	V	Q	T	P	P	G	L	H	H	.	.	.	.	.	.	.	H	R	A	.	.	.	.	.	.	.	.	.	.	L	Y	D	C	Y	I	T	A	A	L	L	I	D	I
Query Conservation																																						.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.
Alig confidence												.																										.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		D	M	Y	G	I	I	T	D	K	I	.	K	L	S	S	Y	K	L	N	A	V	A	E	A	V	L	K	D	K	K	K	D	L	S	Y	R	D	I	P	A	Y	Y	A	T	G	P	A	Q	R	G	V	I	G	E	Y	C	I	Q	D	S	L	L	V	G	Q	L	F	F	K	F
Template Known Secondary structure									T	T		.			S			S																		T	T	T
Template Predicted Secondary structure												.
Template SS confidence
		524	.	.	.	.	.	530	.	.	.		.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions