Job Description P0AEK0 Confidence 97.18% Date Thu Jan 5 11:23:32 GMT 2012 Rank 41 Aligned Residues 148 % Identity 18% Template c2dtuA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog Resolution 2.37 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.										.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	I	I	D	T	E	T	C	G	L	Q	.	.	.	.	.	.	.	.	.	G	G	I	V	E	I	A	S	V	D	V	I	D	G	K	I	V	N	P	M	S	H	L	V	R	P	D	R	P	I	S	P	Q	A	M	A	I	H	R	I	T	E	A	M	V	A	D	K	P	.	.	.	.	.	.	.	.	.	.
Query Conservation														.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																		.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		V	A	N	F	D	I	E	V	T	S	P	D	G	F	P	E	P	S	Q	A	K	H	P	I	D	A	I	T	H	Y	D	S	I	D	D	R	F	Y	.	V	F	D	L	L	N	S	P	Y	G	N	V	E	E	W	S	I	E	I	A	A	K	L	Q	E	Q	G	G	D	E	V	P	S	E	I	I	D	K	I	I	Y
Template Known Secondary structure												S	S	S	S			T	T	T			S										T	T	T	T				.								T	T													S		G	G	G	T						T	T	T	G	G	G
Template Predicted Secondary structure																																								.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
						63	.	.	.	.	.	.	70	.	.							.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.																															.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure		.	.	.	.											.	.	.	.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.											.	.	.	.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	W	I	E	D	V	I	P	H	Y	Y	.	.	.	.	.	.	G	S	E	W	Y	V	A	H	N	A	.	S	F	D	R	R	V	L	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	G	E	W	I	C	T	M	K
Query Conservation		.	.	.	.											.	.	.	.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.											.	.	.	.	.	.											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	P	F	D	N	E	K	E	L	L	M	E	Y	L	N	F	W	Q	Q	K	T	P	V	I	L	T	G	W	N	V	E	S	F	A	I	P	Y	V	Y	N	R	I	K	N	I	F	G	E	S	T	A	K	R	L	S	P	H	R	K	T	R	V	K	V	G	E	I	I	T	L	F	G	I	S	V	L	D	Y	I	D
Template Known Secondary structure					S	S															T			S					S	S	T	T	T	T													S						G	G	G	S	T	T	S						S	S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		102	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.														.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure							.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	R	R	L	.	W	P	G	I	K	Y	S	N	M	A	L	Y	K	T	R	K	L	N	V	Q	T	P	P	G	L	H	H	H	R	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	C	Y	I	T	A	A	L	L	I	D	I
Query Conservation							.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	K	K	F	S	F	T	N	Q	P	S	Y	S	L	D	Y	I	S	E	F	E	L	N	V	G	K	L	K	Y	D	G	P	I	S	K	L	R	E	S	N	H	Q	R	Y	I	S	Y	N	I	I	A	V	Y	R	V	L	Q	I	D	A	K	R
Template Known Secondary structure							S					S													S			S				S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions