Job Description P0AEK0 Confidence 98.81% Date Thu Jan 5 11:23:32 GMT 2012 Rank 25 Aligned Residues 136 % Identity 20% Template c1tk0A_ PDB info PDB header:transferase/electron transport/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and2 ddctp at the insertion site Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	I	I	D	T	E	T	C	G	L	Q	G	G	I	V	E	I	A	S	V	D	V	I	D	G	K	I	V	N	P	M	S	H	L	V	R	P	D	R	P	I	S	P	Q	A	M	A	I	H	R	I	T	E	A	M	V	A	D	K	P	W	I	E	D	V	I	P	H	Y	Y	G	S	E	W	Y	V	A	H	N
Query Conservation
Alig confidence																													.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	V	S	D	I	E	A	N	A	L	L	E	S	V	T	K	F	H	C	G	V	I	Y	D	Y	S	.	.	T	A	E	Y	V	S	Y	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	F	G	A	Y	L	D	A	L	E	A	E	V	A	R	G	G	L	I	V	F	H	N
Template Known Secondary structure										S	S		G	G	G												T	T	.	.	T	T							G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G														T	T						S	S
Template Predicted Secondary structure																													.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.																			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
			82	.	.	.	.	.	.	.	90	.	.	.	.													.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure		.														.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.														.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	A	S	F	D	R	R	V	L	P	E	M	P	G	.	.	.	.	.	.	.	.	.	.	.	.	E	W	I	C	T	M	K	L	A	R	R	L	W	P	G	I	K	Y	S	N	M	A	L	Y	K	T	R	K	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.														.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.														.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	H	K	Y	D	V	P	A	L	T	K	L	A	K	L	Q	L	N	R	E	F	H	L	P	R	E	N	C	I	D	T	L	V	L	S	R	L	I	H	S	N	L	K	D	T	D	M	G	L	L	R	S	G	K	L	P	G	A	L	E	A	W	G	Y	R	L	G	E	M	K	G	E	Y	K	D	D	F	K	R	M
Template Known Secondary structure		T	T	T	T																					G	G	G												T	T	T	S				T	T	T	T	S		G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
															125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	T	P	P	G	L	H	H	H	R	A	L	Y	D	C	Y	I	T	A	A	L	L	I	D	I	M	N	T	S	G	W	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	E	Q	G	E	E	Y	V	D	G	M	E	W	W	N	F	N	E	E	M	M	D	Y	N	V	Q	D	V	V	V	T	K	A	L	L	E	K	L	L	S	D	K	H	Y	F
Template Known Secondary structure				T	S	S					T	T	G	G	G	T	S																									T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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