Job Description P76219 Confidence 2.06% Date Thu Jan 5 12:20:43 GMT 2012 Rank 42 Aligned Residues 182 % Identity 13% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.											.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	F	F	G	Y	S	L	Y	I	L	L	F	I	I	A	T	L	L	L	L	P	G	S	I	L	V	I	A	G	G	I	V	F	G	P	L	L	G	.	.	.	.	.	.	.	.	.	.	T	L	L	S	L	I	A	A	T	L	A	S	S	C	S	F	L	L	A	R	W	L	G	R	D	L	L	L	K	Y	V
Query Conservation																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T
Template Known Secondary structure		S		S	T					T	T																											G	G	G	S	S				T	T	T	T																														T	S	S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	S	N	T	F	Q	A	I	E	K	G	I	A	R	N	G	I	D	F	L	I	L	T	R	L	I	P	L	F	P	Y	N	I	Q	N	Y	A	Y	G	L	T	T	I	A	F	W	P	Y	T	L	I	S	A	L	T	T	L	P	G	I	V	I	Y	T	V	M	A	S	D	L	A	N	E	G	I	T	L	R	F
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	.	.	.	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F
Template Known Secondary structure			S	S	T	T										.	.	.																				G	G	G	S	S																												S	S	S			S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.				.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	Q	L	C	L	A	G	L	A	L	F	I	L	V	Q	L	A	K	L	Y	A	R	H	K	H	V	D	L	S	A	S	R	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q	L	H	L	A	A
Template Known Secondary structure																T	G	G	G	S	T	T	T			S	S		T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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