Job Description P77286 Confidence 6.84% Date Thu Jan 5 12:27:14 GMT 2012 Rank 63 Aligned Residues 135 % Identity 16% Template d1fepa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.40

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		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	R	G	V	T	A	S	V	E	G	G	Y	T	F	E	A	G	T	F	S	G	S	E	G	T	L	N	T	W	Y	V	Q	P	Q	A	Q	I	T	W	M	G	V	K	D	S	D	H	T	R	K	D	G	T	R	I	E	T	E	G	D	G	N	V	Q	T	R	L	G	V	K	T	Y	L	N	S	H	H	Q	R
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																								.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																								.
Template Sequence		K	A	V	V	E	G	L	E	G	S	L	N	V	P	V	S	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	V	X	W	T	N	N	I	T	Y	X	L	K	S	E	N	K	T	T	.	.	.	.	.	.	.	G	D	R	L	S	I	I	P	E	Y	T	L	N	S	T	L	S	W	Q	A	R	E	D	.
Template Known Secondary structure																		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T	T	.	.	.	.	.	.	.				S	S				S													T	T	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																								.
Template SS confidence
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.														.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.								.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420				.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																							.	.	.																																			.	.	.	.	.	.
Query SS confidence																																							.	.	.																																			.	.	.	.	.	.
Query Sequence		D	D	G	K	Q	R	E	F	Q	P	Y	I	E	A	N	W	I	N	N	S	K	V	Y	A	V	K	M	N	G	Q	T	V	G	R	E	G	A	.	.	.	R	N	L	G	E	V	R	T	G	V	E	A	K	V	N	N	N	L	S	L	W	G	N	V	G	V	Q	L	G	D	K	G	Y	S	.	.	.	.	.	.
Query Conservation																																							.	.	.																																			.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																															.	.	.																																			.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	L	S	X	Q	T	T	F	T	W	Y	G	K	Q	Q	P	K	K	Y	N	Y	K	G	Q	P	A	V	G	P	E	T	K	E	I	S	P	Y	S	I	V	G	L	S	A	T	W	D	V	T	K	N	V	S	L	T	G	G	V	D	N	L	F	D	K	R	L	W	R	A	G	N	A	Q	T
Template Known Secondary structure		.	.	.	.	.	.	.													B				S	B		T	T	S		B			G	G	G	G			B															S	S	S									S	T	T				B				S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
																							455	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	Q	G	M	L	G	V	K	Y	S	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	D	L	A	G	A	N	Y	I	A	G	A	G	A	Y	T	Y	N	E	P	G	R	T	W	Y	X	S	V	N	T	H	F
Template Known Secondary structure					T	T	S	S	S						T	T					B
Template Predicted Secondary structure
Template SS confidence
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions