Job Description P77286 Confidence 100.00% Date Thu Jan 5 12:27:14 GMT 2012 Rank 4 Aligned Residues 245 % Identity 23% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	S	S	M	W	M	R	H	V	G	G	H	E	R	S	R	A	G	D	G	Q	L	N	T	Q	A	N	R	Y	V	L	Q	L	G	G	D	L	A	Q	W	S	S	N	A	Q	D	R	W	H	L	G	V	M	A	G	Y	A	N	Q	H	S	N	T	Q	S	N	R	V	G	Y	K	S	D	G	R	I	S	G	Y
Query Conservation
Alig confidence																			.	.	.	.	.																						.	.																				.	.	.	.	.
Template Conservation																			.	.	.	.	.																						.	.																				.	.	.	.	.
Template Sequence		D	A	G	G	P	W	A	R	T	F	S	E	R	Q	Q	I	S	.	.	.	.	.	N	A	Y	D	Q	T	V	S	G	L	E	I	G	L	D	R	G	W	S	A	S	.	.	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	Y	.	.	.	.	.	P	G	D	G	G	G	K	V	K	G	L
Template Known Secondary structure																			.	.	.	.	.																					T	.	.	T																		B	.	.	.	.	.	T	T	T	B
Template Predicted Secondary structure																			.	.	.	.	.																						.	.																				.	.	.	.	.
Template SS confidence
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.						.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.			.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.						.	.	.	.	.	.	.	.	810	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.					.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		S	A	G	L	Y	A	T	W	Y	Q	N	D	A	N	K	T	G	A	Y	V	D	S	W	A	L	Y	N	W	F	D	N	S	V	S	S	D	.	.	.	.	N	R	S	A	D	D	Y	D	S	R	G	V	T	A	S	V	E	G	G	Y	T	F	E	A	G	T	F	S	G	S	E	G	T	L	N	T	W	Y	V	Q
Query Conservation																																						.	.	.	.
Alig confidence										.	.	.	.																									.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.																																																						.	.	.	.	.	.	.	.	.
Template Sequence		H	V	G	G	Y	A	A	Y	.	.	.	.	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	.	.	.	.	.	.	.	.	.	N	D	W	F	A	E
Template Known Secondary structure										.	.	.	.			S	S	S	B																				S	S	S																				B					G	.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure										.	.	.	.																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		817	.	.	820	.	.	.	.					.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.										.	.	880	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	Q	I	T	W	M	G	V	K	D	S	D	H	T	R	K	D	G	T	R	I	E	T	E	G	D	G	N	V	Q	T	R	L	G	V	K	T	Y	L	N	S	H	H	Q	R	D	D	G	K	Q	R	E	F	Q	P	Y	I	E	A	N	W	I	N	N	S	K	V	Y	A	V	K	M	N	G	Q	T	V	G
Query Conservation
Alig confidence																																.	.	.	.																																							.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.																																							.	.	.	.	.	.	.	.
Template Sequence		P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	.	.	.	.	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	R	.	.	.	.	.	.	.	.
Template Known Secondary structure																			S	S	S											.	.	.	.																T	T	S																					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.																																							.	.	.	.	.	.	.	.
Template SS confidence
		884	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.					.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	G	A	R	N	L	G	E	V	R	T	G	V	E	A	K	V	N	N	N	L	S	L	W	G	N	V	G	V	Q	L	G	D	K	G	Y	S	D	T	Q	G	M	L	G	V	K	Y	S	W
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure		.	.	.	.	B														G	G	G	B												S	S													B
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						965	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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