Job Description P77286 Confidence 91.65% Date Thu Jan 5 12:27:14 GMT 2012 Rank 30 Aligned Residues 156 % Identity 9% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	A	D	D	Y	D	S	R	G	V	T	A	S	V	E	G	G	Y	T	F	E	A	G	T	F	S	G	S	E	G	T	L	N	T	W	Y	V	Q	P	Q	A	Q	I	T	W	M	G	V	K	D	S	D	H	T	R	K	D	G	T	R	I	E	T	E	G	D	G	N	V	Q	T	R	L	G	V	K	T	Y	L
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		S	M	E	S	N	T	W	N	T	I	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	.	.	.	.	.	.	.	.	.	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	.	.	.	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W
Template Known Secondary structure																								S	S	.	.	.	.	.	.	.	.	.	S	S													.	.	.	T	T															S	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.										.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		378	.							380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.					.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.																									.	.	.	.																																											.	.
Query SS confidence				.	.	.	.	.	.																									.	.	.	.																																											.	.
Query Sequence		N	S	.	.	.	.	.	.	H	H	Q	R	D	D	G	K	Q	R	E	F	Q	P	Y	I	E	A	N	W	I	N	N	S	.	.	.	.	K	V	Y	A	V	K	M	N	G	Q	T	V	G	R	E	G	A	R	N	L	G	E	V	R	T	G	V	E	A	K	V	N	N	N	L	S	L	W	G	N	V	G	.	.
Query Conservation				.	.	.	.	.	.																									.	.	.	.																																											.	.
Alig confidence				.	.	.	.	.	.																									.	.	.	.																																											.	.
Template Conservation
Template Sequence		K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L
Template Known Secondary structure			S	S					T	T	S																			S	S	S													S	S	S				T	T	S	S	S													S	B	T	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
						446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	V	Q	L	G	D	K	G	Y	S	D	T	Q	G	M	L	G	V	K	Y	S
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V	S	F	K
Template Known Secondary structure			S					T	T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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