Job Description P77286 Confidence 96.18% Date Thu Jan 5 12:27:14 GMT 2012 Rank 23 Aligned Residues 234 % Identity 13% Template c2iwvD_ PDB info PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Resolution 2.3 Å

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		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	M	R	H	V	G	G	H	E	R	S	R	A	G	D	G	Q	L	N	T	Q	A	N	R	Y	V	L	Q	L	G	G	D	L	A	Q	W	S	S	N	A	Q	D	R	W	H	L	G	V	M	A	G	Y	A	N	Q	H	S	N	T	Q	S	N	R	V	G	Y	K	S	D	G	R	I	S	G	Y	S	A	G	L	Y
Query Conservation
Alig confidence																																										.	.	.																														.	.
Template Conservation																																										.	.	.																														.	.
Template Sequence		W	R	I	A	L	A	Y	Y	Q	E	G	P	V	D	Y	S	A	G	K	R	G	T	W	F	D	R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	.	.	.	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	.	.	W	K	I	A	P	D
Template Known Secondary structure																T	T	T	T				S																	S	S	.	.	.																	S	S		T	T									.	.
Template Predicted Secondary structure																																										.	.	.																														.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	W	Y	Q	N	D	A	N	K	T	G	A	Y	V	D	S	W	A	L	Y	N	W	F	D	N	S	V	S	S	D	N	R	S	A	D	D	Y	D	S	R	G	V	T	A	S	V	E	G	G	Y	T	F	E	A	G	T	F	S	G	S	E	G	T	L	N	T	W	Y	V	Q	P	Q	A	Q	I	T	W	M	G
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	D	V	K	L	T	D	D	L	R	.	.	.	.	.	.	.	.	.	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	G	Y	A	D	T	R	V	E	T	E	T	G	L	Q	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N	E	T	V	A	L	R	V	N	Y
Template Known Secondary structure							S	S	S			.	.	.	.	.	.	.	.	.												S									S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	B
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.										.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160																		.	.	.	.	.	.	.	.	.	170	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	D	S	D	H	T	R	K	D	G	T	R	I	E	T	E	G	D	G	N	V	Q	T	R	L	G	V	K	T	Y	L	N	S	H	H	Q	R	D	D	G	K	Q	R	E	F	Q	P	Y	I	E	A	N	W	I	N	N	S	K	V	Y	A	V	K	M	N	G	Q	T	V	G	R	E	G	A	R	N	L	G	E
Query Conservation
Alig confidence															.	.	.	.	.	.																		.	.	.	.	.																															.	.	.	.	.
Template Conservation															.	.	.	.	.	.																		.	.	.	.	.																															.	.	.	.	.
Template Sequence		Y	L	E	R	G	F	N	M	D	D	S	R	N	.	.	.	.	.	.	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L	.	.	.	.	.	G	N	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N	W	D	W	Q	D	D	I	E	R	E	G	H	.	.	.	.	.	D	F	N	R
Template Known Secondary structure									S	S	T	T			.	.	.	.	.	.	T	T																.	.	.	.	.	T	T																	T	T	T	T	T			S					.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.																		.	.	.	.	.																															.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.							.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.					.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		V	R	T	G	V	E	A	K	V	N	N	N	L	S	L	W	G	N	V	G	V	Q	.	.	.	.	L	G	D	K	G	Y	S	D	T	Q	G	M	L	G	V	K	Y	S	W
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.
Template Conservation
Template Sequence		V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	W	Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S	F
Template Known Secondary structure											S	S	S															S	S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions