Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGG4
Confidence99.93%DateThu Jan 5 11:29:03 GMT 2012
Rank5Aligned Residues105
% Identity23%Templatec3hz4A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from methanosarcina mazei
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   35....40......... 50.........60.........70.........80.........90.........100.........110...
Predicted Secondary structure 



.

























Query SS confidence 














.































































Query Sequence  GEVINATGETLDKLL. KDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIF
Query Conservation    
  
    
   
.     


 
 
 

  
    
                               
   

 
  
Alig confidence 














.































































Template Conservation 
 
  
    
   
       

 
 
 

  
                                    
   

 
  
Template Sequence  SSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFF
Template Known Secondary structure  TT
TTT
SS

TT
TTTSTTT
T

SSS
Template Predicted Secondary structure 





























Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   114.....120.........130.........
Predicted Secondary structure 






Query SS confidence 

























Query Sequence  KNGQVVDMLNGAVPKAPFDSWLNESL
Query Conservation   

  
 
  
      
   
   
Alig confidence 

























Template Conservation    
       
      
   
   
Template Sequence  CHGRPVWEQVGQIYPSILKNAVRDXL
Template Known Secondary structure  TTSS

Template Predicted Secondary structure 






Template SS confidence 

























   84.....90.........100.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions