Phyre 2 alignment of P39371 with d1qksa2

Job Description P39371
Confidence 28.70% Date Thu Jan 5 12:00:05 GMT 2012

Rank 79 Aligned Residues 237

% Identity 11% Template d1qksa2

SCOP info 8-bladed beta-propeller C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase

Resolution 1.28

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence	V	Y	I	G	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	D	G	N	L	Y	V	F	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V	K	L
Query Conservation
Alig confidence																			.	.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template Sequence	L	F	S	V	T	L	R	D	A	G	Q	I	A	L	I	D	G	S	.	.	.	.	T	Y	E	I	K	T	V	L	D	T	G	Y	A	V	H	I	S	R	L	S	A	S	G	R	Y	L	F	V	I	G	R	D	G	K	.	.	.	.	.	.	.	.	.	.	V	N	M	I	D	L	W	M	K	E	P	T	T	V
Template Known Secondary structure							T	T	T	T							T	T	.	.	.	.	T										S	S									T	T	S								T	T	S		.	.	.	.	.	.	.	.	.	.						T	T	S	S	S
Template Predicted Secondary structure																			.	.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
	168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.											220	.	.	.	.	.	.	.	.	.	230	.	.	.

	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence	M	S	H	A	P	M	G	M	A	G	H	V	T	F	V	H	.	.	.	.	N	G	K	A	Y	V	T	G	G	V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	E	I	K	I	G	S	E	A	R	S	I	E	T	S	K	M	E	G	W	E	D	K	Y	A	I	A	G	A	Y	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	Q	Y	V	I	M	D	G	E	T
Template Known Secondary structure							S										S	T	T		T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							T	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.																																							.	.	.	.	.	270	.	.	.	.	.

	197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence	Q	Q	W	S	Y	A	G	E	S	P	W	Y	G	T	A	G	A	A	V	V	N	K	G	D	K	T	W	L	I	N	G	E	A	K	P	G	.	.	.	L	R	T	D	A	V	F	E	L	D	F	T	G	N	N	L	K	W	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	N	D	S
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.
Template Conservation
Template Sequence	L	E	P	K	K	I	Q	S	T	R	G	M	T	Y	D	E	Q	E	Y	H	P	E	P	R	V	A	A	I	L	A	S	H	Y	R	P	E	F	I	V	N	V	K	E	T	G	K	I	L	L	V	D	Y	T	D	L	N	N	L	K	T	T	E	I	S	A	E	R	F	L	H	D	G	G	L	D	G	S	H	R	Y
Template Known Secondary structure														T	T	T					S											S	S	S	S							T	T	T	T							T	T		S	S	S										S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

	274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.					320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence	L	I	F	A	G	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	.	.	.	.	G	E	L	S	Q	G	R	A	Y	G	V	S	L	P	W	N	N	S	L	L	I	I	G	G	E	T	A	G	G	K
Query Conservation																																															.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	I	T	A	A	N	A	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	V	V	I	D	T	K	E	G	K	L	V	A	I	E	D	T	G	G	Q	T	P	H	P	G	R	G	A	N	F	V	H	P	T	F	G	P	V	W	A	T	S	H	M	G	D	D	S
Template Known Secondary structure						G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	T									S	S	S	S	B			T	T							T	T	T								B	S	S	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	356	.	.	.	360	.	.	.	.																							.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	414	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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