Job Description P39371 Confidence 100.00% Date Thu Jan 5 12:00:05 GMT 2012 Rank 3 Aligned Residues 322 % Identity 12% Template d1k3ia3 SCOP info 7-bladed beta-propeller Galactose oxidase, central domain Galactose oxidase, central domain Resolution 1.40

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.									.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.
Query Sequence		M	A	S	F	A	A	N	A	S	V	L	P	E	T	P	V	P	F	K	S	G	T	G	A	I	D	N	D	T	V	Y	I	G	L	G	S	A	G	T	A	W	.	.	.	.	.	.	.	.	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I
Query Conservation																																											.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.																				.
Template Conservation																																																																						.
Template Sequence		P	Q	P	G	L	G	R	W	G	P	T	I	D	L	P	I	V	P	A	A	A	A	I	E	P	T	S	G	R	V	L	M	W	S	S	Y	R	N	D	A	F	G	G	S	P	G	G	I	T	L	T	S	S	W	D	P	S	T	G	I	V	S	D	R	T	V	T	V	.	T	K	H	D	M	F	P	G	I	S	M
Template Known Secondary structure				T	T	S										S	S			S						T	T	T	T											T	T	T		S				S									T	T	T			B								.		S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.
				84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	D	G	N	L	Y	V	F	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V	K	L	M	S	H	A	P	M	G	M	A	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	G	G	V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A
Query Conservation		.	.
Alig confidence		.	.															.	.	.	.	.	.	.	.	.																																													.	.
Template Conservation																		.	.	.	.	.	.	.	.	.																																													.	.
Template Sequence		D	G	N	G	Q	I	V	V	T	G	G	N	D	A	K	K	.	.	.	.	.	.	.	.	.	T	S	L	Y	D	S	S	S	D	S	W	I	P	G	P	D	M	Q	V	A	R	G	Y	Q	S	S	A	T	M	S	D	G	R	V	F	T	I	G	G	S	W	S	G	G	.	.	V	F	E	K	N	G	E	V	Y
Template Known Secondary structure			T	T	S							S	S	S	T	T		.	.	.	.	.	.	.	.	.						G	G	G	T									S	S			S	S							T	T	S											S	S	.	.	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																																													.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.										250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.
		162	.	.	.	.	.	.	.	170																										.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Query Sequence		G	K	D	S	T	A	I	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T	Q	Q	W	S	Y	A	G	E	S	P	W	.	.	.	.	.	.	Y	G	T
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	S	S	K	T	W	T	S	L	P	N	A	K	V	N	P	M	L	T	A	D	K	Q	G	L	Y	R	S	D	N	H	A	W	L	F	G	W	K	K	G	S	V	F	Q	A	G	P	S	T	A	M	N	W	Y	Y	T	S	G	S	G	D	V	K	S	A	G	K	R	Q	S	N	R	G	V	A	P	D	A	M
Template Known Secondary structure			T	T	T	T						T	T	S		S	G	G	G					T	T	G	G	G	T	T	T		S							G	G	G							S	S	S								S	T	T												T	T							B
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		211	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure										.	.																											.	.	.	.	.																											.
Query SS confidence										.	.																											.	.	.	.	.																											.
Query Sequence		A	G	A	A	V	V	N	K	.	.	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	.	.	.	.	.	G	N	N	L	K	W	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	.	N	D	S	L	I	F	A	G	G	A	G	F
Query Conservation										.	.																											.	.	.	.	.																											.
Alig confidence										.	.																											.	.	.	.	.																		.	.								.
Template Conservation																																																												.	.
Template Sequence		C	G	N	A	V	M	Y	D	A	V	K	G	K	I	L	T	F	G	G	S	P	D	Y	Q	D	S	D	A	T	T	N	A	H	I	I	T	L	G	E	P	G	T	S	P	N	T	V	F	A	S	N	G	L	Y	F	A	R	T	.	.	F	H	T	S	V	V	L	P	D	G	S	T	F	I	T	G	G	Q	R	R
Template Known Secondary structure		T								T	T	T	T								B	S	S	S	S	S	S	B												S	T	T	S								T	T			S	S			B	.	.	S							T	T	S								B	S	B
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440			.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.										.	.
Query SS confidence																																																						.	.										.	.
Query Sequence		K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	S	Q	G	R	A	Y	G	V	S	L	P	W	.	.	N	N	S	L	L	I	I	G	G	.	.	E	T	A	G	G	K	A	V	T	D	S	V	L	I	T
Query Conservation																																																						.	.										.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																																	.	.										.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	P	F	E	D	S	T	P	.	.	.	.	.	.	.	.	.	.	.	V	F	T	P	E	I	Y	V	P	E	Q	D	T	F	Y	K	Q	N	P	N	S	I	V	R	V	Y	H	S	I	S	L	L	L	P	D	G	R	V	F	N	G	G	G	G	L	C	G	D	C	T	T	N	H	F	D	A	Q	I	F	T
Template Known Secondary structure				T	T				S	B	.	.	.	.	.	.	.	.	.	.	.									G	G	G	T									S	S				T	T							T	T	S											T	T		S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		461	.	.	.	.	.	.	.	.												470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions