Phyre 2 alignment of P39371 with d1jmxb

Job Description P39371
Confidence 51.86% Date Thu Jan 5 12:00:05 GMT 2012

Rank 62 Aligned Residues 281

% Identity 11% Template d1jmxb_

SCOP info 7-bladed beta-propeller YVTN repeat-like/Quinoprotein amine dehydrogenase Quinohemoprotein amine dehydrogenase B chain

Resolution 1.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	I	G	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	D	G	N	L	Y	V	F	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V	K	L	M
Query Conservation
Alig confidence																										.	.																														.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																														.	.	.	.	.	.	.	.	.
Template Sequence	Y	M	I	V	T	N	Y	P	N	N	L	H	V	V	D	V	A	S	D	T	V	Y	K	S	C	.	.	V	M	P	D	K	F	G	P	G	T	A	M	M	A	P	D	N	R	T	A	Y	V	L	N	N	H	Y	G	D	.	.	.	.	.	.	.	.	.	I	Y	G	I	D	L	D	T	C	K	N	T	F	H	A
Template Known Secondary structure							T	T	T							T	T	T	T							.	.			S	S			S	S							T	T	S	S							T	T	T	T		.	.	.	.	.	.	.	.	.						T	T	T	T
Template Predicted Secondary structure																										.	.																														.	.	.	.	.	.	.	.	.
Template SS confidence
	13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.										.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	122	.	.	.	.	.							.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.																	.	.	.																																												.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																	.	.	.																																												.	.	.	.	.	.
Query Sequence	S	H	A	P	M	G	.	.	.	.	.	.	M	A	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	.	.	.	G	G	V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.																	.	.	.																																												.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																	.	.	.																																												.	.	.	.	.	.
Template Conservation
Template Sequence	N	L	S	S	V	P	G	E	V	G	R	S	M	Y	S	F	A	I	S	P	D	G	K	E	V	Y	A	T	V	N	P	T	Q	R	L	N	D	H	Y	V	V	K	P	P	R	L	E	V	F	S	T	A	D	G	L	E	A	K	P	V	R	T	F	P	M	P	R	Q	V	Y	L	M	R	A	A	D	D	G	S	L
Template Known Secondary structure		S			S	T	T						S	S						T	T	S	S													S	S														G	G	G	G	G	G	B			S							S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

					187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210										.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	K	F	L	L	S	F	D	P	S	T	Q	Q	W	S	Y	A	G	E	S	P	W	Y	G	T	.	.	.	.	.	.	.	.	.	A	G	A	A	V	V	N	K	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	G	N	N	L	K	W	N	K	L
Query Conservation	.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	V	A	G	P	D	I	Y	K	M	D	V	K	T	G	K	Y	T	V	A	L	P	L	R	N	W	N	R	K	G	Y	S	A	P	D	V	L	Y	F	W	P	H	Q	S	P	R	H	E	F	S	M	L	Y	T	I	A	R	F	A	T	A	D	L	L	Y	G	Y	L	S	V	D	L	K	T	G	K	T	H	T	Q
Template Known Secondary structure				S	S	S						T	T	T									S	T	T				T	T	B				B										T	T																										T	T	T
Template Predicted Secondary structure
Template SS confidence
	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

	254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	N	D	S	L	I	F	A	G	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	S	Q	G	R	A	Y	G	V	S	L	P
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence	E	F	A	D	L	T	E	L	Y	F	T	G	L	R	S	P	K	D	P	N	Q	I	Y	G	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	L	A	K	Y	D	L	K	Q	R	K	L	I	K	A	A	N	L	D	.	H	T	Y	Y	C	V	A	F	D
Template Known Secondary structure						S	S									S	S		T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T	T	T									S	.	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
	249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.																									.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.

	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	N	N	S	L	L	I	I	G	G	E	T	A	G	G	K	A	V	T	D	S	V	L	I	T	V	K	D	N	K	V
Query Conservation
Alig confidence													.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.
Template Sequence	K	K	G	D	K	L	Y	L	G	G	T	F	.	.	.	.	.	.	N	D	L	A	V	F	N	P	D	T	L	E	K
Template Known Secondary structure	S	S	S	S						S	B	S	.	.	.	.	.	.	S							T	T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
	304	.	.	.	.	.	310	.	.	.	.	.							.	.	.	.	320	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions