Job Description P39371 Confidence 88.70% Date Thu Jan 5 12:00:05 GMT 2012 Rank 46 Aligned Residues 226 % Identity 12% Template c3jroA_ PDB info PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice Resolution 4.00 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		Y	I	G	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	.	.	.	D	G	N	L	Y	V	F	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V
Query Conservation																																												.	.	.
Alig confidence																			.	.																								.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	A	T	C	S	S	D	K	T	I	K	I	F	E	V	E	.	.	G	E	T	H	K	L	I	D	T	L	T	G	H	E	G	P	V	W	R	V	D	W	A	H	P	K	F	G	T	I	L	A	S	C	S	Y	D	G	K	.	.	.	.	.	.	.	.	.	.	V	L	I	W	K	E	E	N	G	R	W	S
Template Known Secondary structure								T	T	T									.	.	T	T												S	S										T	T	S		S							T	T	S		.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																			.	.																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.											.	80	.	.	.	.	.	.	.	.	.	90
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		K	L	M	S	H	A	P	M	G	M	A	G	H	V	T	F	V	H	N	.	.	.	G	K	A	Y	V	T	G	G	V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S
Query Conservation																					.	.	.
Alig confidence																					.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	I	A	V	H	A	V	H	S	A	S	V	N	S	V	Q	W	A	P	H	E	Y	G	P	L	L	L	V	A	S	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	V	S	V	V	E	F	K
Template Known Secondary structure										S	S										G	G	G		S							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																																								.	.	.	.	.	.	.	130	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		T	Q	Q	W	S	Y	A	G	E	S	P	W	Y	G	T	A	G	A	A	V	V	N	K	.	.	.	.	.	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	G	N	N	L	K	W	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.													.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.
Template Sequence		E	N	G	T	T	S	P	I	I	I	D	A	H	A	I	G	V	N	S	A	S	W	A	P	A	T	T	K	E	S	R	K	F	V	T	G	G	A	D	N	.	.	.	.	.	.	L	V	K	I	W	K	Y	N	S	D	A	Q	T	Y	V	L	E	S	T	L	E	G	H	S	D	W	V	R	D	V	A	W	S	P
Template Known Secondary structure		S	S	S											S	S													G	G	G								T	T	S	.	.	.	.	.	.									T	T	T	T												S	S
Template Predicted Secondary structure																																										.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.							.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		271				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.						.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure			.	.	.																																																				.	.	.	.	.
Query SS confidence			.	.	.																																																				.	.	.	.	.
Query Sequence		N	.	.	.	D	S	L	I	F	A	G	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	.	.	.	.	.	S	Q	G	R	A	Y	G	V	S	L	P	W	N	N	S	L	L	I	I	G
Query Conservation			.	.	.																																																				.	.	.	.	.
Alig confidence			.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	L	L	R	S	Y	L	A	S	V	S	Q	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	C	I	I	W	T	Q	D	N	E	Q	G	P	W	K	K	T	L	L	K	E	E	K	F	P	D	V	L	W	R	A	S	W	S	L	S	G	N	V	L	A	L	S
Template Known Secondary structure				S	S	S								S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S	S	S	S			B			B	S	S	S	S			S	S									T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.																							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		343	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	D	N
Template Known Secondary structure			S	S	S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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