Job Description P39371 Confidence 96.49% Date Thu Jan 5 12:00:05 GMT 2012 Rank 18 Aligned Residues 288 % Identity 11% Template c3hfqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. Resolution 1.96 Å

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		40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		T	V	Y	I	G	.	.	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	D	G	N	L	Y	V	F	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W
Query Conservation							.	.
Alig confidence							.	.																																																							.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.
Template Sequence		R	I	L	F	G	T	Y	T	K	K	T	S	Q	G	I	Y	Q	G	T	L	D	T	T	A	K	T	L	T	N	D	G	L	L	A	A	T	Q	N	P	T	Y	L	A	L	S	A	K	D	C	L	Y	S	V	D	K	E	D	D	E	G	G	.	.	.	.	.	.	.	.	I	A	A	W	Q	I	D	G	Q	T	A
Template Known Secondary structure										S	S	S											T	T	T	T												S									T	T										T	T				.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.									.	.	.	.	.	70	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.																		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	L	M	S	H	A	P	M	G	M	A	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	G	G	V	N	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I	N	A	H	Y	F	D	K	K	A
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	L	N	T	V	V	A	P	G	T	P	P	A	Y	V	A	V	D	E	A	R	Q	L	V	Y	S	A	N	Y	H	K	G	T	A	E	V	X	K	I	A	A	D	G	A	L	T	L	T	D	T	V	Q	H	S	G	H	G	P	R	P	E	Q	D	G	S	H	I	H	Y	T	D	L	T	P	D	N	R	L	A
Template Known Secondary structure											S				S						T	T	T	T							T	T	T	T									T	T	S															S	S	T	T		S	S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T	Q	.	.	.	Q	W	S	Y	A	G	E	S	P	W	Y	G	T	A	G	A	A	V	V	N	K	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	G	N	N	L	K	W	N	K	L	A	P	V	S
Query Conservation																			.	.	.
Alig confidence																			.	.	.																																			.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		V	I	D	L	G	S	D	K	V	Y	V	Y	N	V	S	D	A	G	Q	L	S	E	Q	S	V	L	T	X	E	A	G	F	G	P	R	H	L	V	F	S	P	D	G	Q	Y	A	F	L	A	G	E	L	S	S	.	.	.	.	.	Q	I	A	S	L	K	Y	D	T	Q	T	G	A	F	T	Q	L	G	I	V	K
Template Known Secondary structure					T	T	T	T									T	T	S												T	T										T	T	S	S							T	T	T	T	.	.	.	.	.									T	T	T	T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.						210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		258	.	260	.	.	.	.	.	.	.	.	.	270								.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																																												.
Query SS confidence															.	.	.	.	.	.	.																																												.
Query Sequence		S	P	D	G	V	A	G	G	F	A	G	I	S	.	.	.	.	.	.	.	N	D	S	L	I	F	A	G	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	.	G	K	W	D	K	S	G	E	L	S	Q	G	R	A	Y	G
Query Conservation															.	.	.	.	.	.	.																																												.
Alig confidence															.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	I	P	A	D	Y	T	A	H	N	G	A	A	A	I	R	L	S	H	D	G	H	F	L	Y	V	S	N	R	G	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	A	V	F	A	V	T	A	D	G	H	L	T	L	I	Q	Q	I	S	T	E	G	D	F	P
Template Known Secondary structure		S	S		T	T			S											T	T	S									T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S											S	S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.																							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		V	S	L	P	W	.	.	N	N	S	L	L	I	I	G	G	E	T	A	G	G	K	A	V	T	D	S	V	L	I	T	V	K	D	N	K	V	T
Query Conservation							.	.
Alig confidence							.	.														.	.	.
Template Conservation																						.	.	.
Template Sequence		R	D	F	D	L	D	P	T	E	A	F	V	V	V	V	N	Q	N	T	D	.	.	.	N	A	T	L	Y	A	R	D	L	T	S	G	K	L	S
Template Known Secondary structure								T	T	S	S							T	T	T	T	.	.	.									T	T	T
Template Predicted Secondary structure																						.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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