Job Description P39371 Confidence 31.87% Date Thu Jan 5 12:00:05 GMT 2012 Rank 76 Aligned Residues 236 % Identity 15% Template c3dm0A_ PDB info PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Resolution 2.40 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		Y	I	G	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	.	.	D	G	N	L	Y	V	F	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V	K
Query Conservation																																												.	.
Alig confidence																																												.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	V	S	A	S	R	D	K	S	I	I	L	W	K	L	T	K	D	D	K	A	Y	G	V	A	Q	R	R	L	T	G	H	S	H	F	V	E	D	V	V	L	S	S	D	G	Q	F	A	L	S	G	S	W	D	G	E	.	.	.	.	.	.	.	.	.	.	L	R	L	W	D	L	A	A	G	V	S	T	R
Template Known Secondary structure								T	T	S										S	T	T		S											S	S									T	T	S	S							T	T	S		.	.	.	.	.	.	.	.	.	.						T	T	T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.											.	.	.	1090	.	.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	S	H	A	P	M	G	M	A	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	G	G	V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T	Q	Q	W
Query Conservation
Alig confidence									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	V	G	H	T	K	.	D	V	L	S	V	A	F	S	L	D	N	R	Q	I	V	S	A	S	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	I	K	L	W	N	T	L	G	E	C	K
Template Known Secondary structure							S	S	.									T	T	S	S							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T	S
Template Predicted Secondary structure									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1100	.	.	.	.	.	.		.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.																																								.	.	.	1130	.	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		S	Y	A	G	E	S	P	W	Y	G	T	A	G	A	A	V	V	N	K	G	.	.	.	.	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	G	N	N	L	K	W	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	N	D	S	L	I
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.											.	.	.	.	.	.	.	.																									.	.
Template Conservation																																				.	.	.	.	.	.	.	.																									.	.
Template Sequence		Y	T	I	S	E	G	G	E	G	H	R	D	W	V	S	C	V	R	F	S	P	N	T	L	Q	P	T	I	V	S	A	S	W	D	.	.	.	.	.	.	.	.	K	T	V	K	V	W	N	L	S	N	C	K	L	R	S	T	L	A	G	H	T	G	Y	V	.	.	S	T	V	A	V	S	P	D	G	S	L	C
Template Known Secondary structure						S	S	T	T	S		S	S									S		S	S	S								T	T	.	.	.	.	.	.	.	.	S							T	T	T											S	S			.	.							T	T	S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.									.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.			.	.	1200	.	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	G	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	S	Q	G	R	A	Y	G	V	S	L	P	W	N	N	S	L	L	I	I	G	G	E	T	A	G	G	K	A	V	T	D	S	V
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.																															.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.																															.	.	.	.	.	.
Template Sequence		A	S	G	G	K	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	L	L	W	D	L	A	E	G	.	.	K	K	L	Y	S	L	E	A	N	S	V	I	H	A	L	C	F	S	P	N	R	Y	W	L	C	A	A	T	E	H	.	.	.	.	.	.	G	I	K
Template Known Secondary structure						T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B						T	T	T	T	.	.							B		S	S									S	S	S	S							T	T	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.																															.	.	.	.	.	.
Template SS confidence
		1210	.	.	.	.	.	.																							.	.	.	1220	.	.	.	.	.	.			.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.							.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	T	V	K	D	N	K	V	T	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	W	D	L	E	S	K	S	I	V	E	D
Template Known Secondary structure					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1260	.	.	.	.	.	.	.	.	.	1270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions