Job Description P39371 Confidence 41.31% Date Thu Jan 5 12:00:05 GMT 2012 Rank 71 Aligned Residues 279 % Identity 10% Template c3c75J_ PDB info PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin Resolution 2.50 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		V	L	P	E	T	P	V	P	F	K	S	G	T	G	A	I	D	N	D	T	V	Y	I	G	L	G	S	A	G	T	.	.	.	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	D	G	N	L	Y	V	F	G	G	I	G	K	N	S
Query Conservation																																.	.	.
Alig confidence																																.	.	.																							.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		A	A	G	E	A	D	E	P	V	I	L	E	A	P	A	P	D	A	R	R	V	Y	I	Q	D	P	A	H	F	A	A	I	T	Q	Q	F	V	I	D	G	S	T	G	R	I	L	G	M	T	D	G	G	F	L	P	.	.	.	.	.	H	P	V	A	A	E	D	G	S	F	F	A	Q	A	S	T	V	F	E	R
Template Known Secondary structure			S	S															T	T								T	T	T		S	S								T	T	T	T										S	S		.	.	.	.	.						T	T	S	S
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.						.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V	K	L	M	S	H	A	P	M	G	M	A	.	.	.	.	.	.	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	G	G	V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I
Query Conservation																																		.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	R	G	K	R	T	D	Y	V	E	V	F	D	P	V	T	F	L	P	I	A	D	I	E	L	P	D	A	P	R	F	L	V	G	T	Y	Q	W	M	N	A	L	T	P	D	N	K	N	L	L	F	Y	Q	F	S	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T													T	T	T										T	T							S			G	G	G	S				T	T	S	S								S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.
Query Sequence		N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T	Q	Q	W	S	Y	A	G	E	S	P	W	.	.	.	.	.	.	Y	G	T	A	G	A	A	V	V	N	K	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	G
Query Conservation																																						.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.																									.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	V	G	V	V	D	L	E	G	K	T	F	D	R	M	L	D	V	P	D	C	Y	H	I	F	P	A	S	P	T	V	F	Y	M	N	C	R	D	G	S	L	A	R	V	D	F	A	D	G	E	.	.	.	.	.	T	K	V	T	N	T	E	V	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	T										S									T	T							T	T	S	S								T	T		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.
Template SS confidence
																	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250						.	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	L	K	W	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	N	D	S	L	I	F	A	G	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	S	Q	G
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	T	E	D	E	L	L	I	N	H	P	A	F	S	L	R	S	G	R	L	V	W	P	T	Y	T	G	K	I	F	Q	A	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	G	A	T	F	R	A	P	I	E	A	L	T	E	A	E	R	A	D	D	W	R	P	G	G
Template Known Secondary structure		S		T	T	S		B		S						T	T	T							B	T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S										S	S		T	T	T	G	G	G	T					S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.																				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.				.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		R	A	Y	G	V	S	L	P	W	N	N	S	L	L	I	I	G	G	E	T	A	G	.	.	.	G	K	A	V	T	D	S	V	L	I	T	V	K	D	N	K	V	T
Query Conservation																								.	.	.
Alig confidence																								.	.	.
Template Conservation
Template Sequence		W	Q	Q	T	A	Y	H	R	Q	S	D	R	I	Y	L	L	V	D	Q	R	D	E	W	K	H	K	A	A	S	R	F	V	V	V	L	N	A	E	T	G	E	R	I
Template Known Secondary structure		S	S						T	T	T	T											T	T		T	T	S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions