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Job DescriptionP39371
Confidence100.00%DateThu Jan 5 12:00:05 GMT 2012
Rank4Aligned Residues269
% Identity20%Templatec2wozA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:kelch repeat and btb domain-containing protein PDBTitle: the novel beta-propeller of the btb-kelch protein krp12 provides the binding site for lasp-1 that is necessary for3 pseudopodia extension
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   26...30.........40.........50.........60.........70.........80.........90.........100.....
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Query Sequence  PVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFN
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Template Sequence  DIPRHGMFVK. . . DLILLVNDTA. . . . . AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVPL. . . . . . QS
Template Known Secondary structure  SS




S...
SS.....TTTT
TTS
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B
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   294.....300... ......310... ......320.........330.........340.........350....... ..
 
   106...110.........120.........130.........140.........150.........160.........170.........180.....
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Query Sequence  DVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFF
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Template Sequence  YFFQLDNVSSEWVGLPPL. PSARCLFGLGEVDDKIYVVAGKDLQT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EAS
Template Known Secondary structure  TTTT
S
B.SS
B
S
TTBTTT................................

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   367..370.........380.... .....390.........400.........410 ...
 
   186...190.........200.........210.........220.........230.........240.........250.........260.....
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Query Sequence  NKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG
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Template Sequence  LDSVLCYDPVAAKWSEVKNLP. IKVYGHNVISHNGMIYCLGGKTDDKKC. . TNRVFIYNPKKGDWKDLAPMKT. . PRSMF
Template Known Secondary structure  TTTT


S.S
S
TT

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   414.....420.........430.... .....440.........450.........460. ........470.........480... .....
 
   266...270.........280.........290.........300.........310.........320.........330.........340.....
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Query Sequence  FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGET
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Template Sequence  GVAIHKGKIVIAGGVTE. . . . . . . . . . . . . . . . . DGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFA
Template Known Secondary structure  TTT.................TTTT





SS

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   489490.........500..... ....510.........520.........530.........540.........550.
 
   346 ...350.........360...
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Query Sequence  A. . . . GGKAVTDSVLITVKDNK
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Template Sequence  MIQEFAPTEVNDIWKYEDDKKE
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   552.......560.........570...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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