 |
Job Description | P0A8X4 | Confidence | 6.27% | Date | Thu Jan 5 11:08:56 GMT 2012 |
Rank | 95 | Aligned Residues | 69 |
% Identity | 10% | Template | c2vr3B_ |
PDB info |
PDB header:cell adhesion | Chain: B: PDB Molecule:clumping factor a; |
PDBTitle: structural and biochemical characterization of fibrinogen2 binding to clfa from staphylocccus aureus
|
Resolution | 1.95 Å |
|
 |
  |   |
22 | . | . | . | . | . | . | . | 30 | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | L | R | L | S | T | D | V | D | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | V | L | D | G | K | K | V | S | S | S | L | L | R | G | A | D | S | I | E | L | D | N | G | P | H | Q | L | V | F | R | V | E | K | T | I | H | L | S | N | S | E | E | R | L | Y | I | S | P | P | L | V | V | S | F | N | T | Q | L |
Query Conservation |   |
|
|   |   |
|   |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|   |
|
|
|   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |
|   |   |
|   |
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
| . | . | . | . | . | . | . | . |
|   |   |   |   |
|   |   | . |   |   |
|
|   |
|
|
|
|
|
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |
Template Sequence |   |
K | I | T | V | P | K | E | L | N | L | N | G | V | T | S | T | A | K | V | P | P | I | M | A | G | D | Q | V | L | . |
. |
. |
. |
. |
. |
. |
. |
A | N | G | V | I | D | S | D | . |
G | N | V | I | Y | T | F | T | D | Y | V | N | T | K | C | D | V | K | A | T | L | T | M | P | A | Y | I | D | P | E | N | V | K | K |
Template Known Secondary structure |   |
 |  |  |
|
| T | T |  |  | S |
| T | T | B | S |
|
|
|
|
|
|  |  |  | T | T |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |
| T | T | . | S |
|  |  |  |  |  |
| G | G | G | G | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | T |
|
| S |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
| . |
|  |  |  |  |  |  |
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
276 | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | 310 | . | . | |
. | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . |
  |
  |   |
91 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | N | Q | V | N | F | R | L | P |
Query Conservation |   |
  |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | G | N | V | T | L | A | T | G |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
347 | . | . | 350 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|