Return to main results Retrieve Phyre Job Id

Job DescriptionP23874
Confidence100.00%DateWed Jan 25 15:20:44 GMT 2012
Rank1Aligned Residues419
% Identity98%Templatec3dntB_
PDB info PDB header:transferaseChain: B: PDB Molecule:protein hipa; PDBTitle: structures of mdt proteins
Resolution1.66 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 











































Query SS confidence 















































































Query Sequence  KLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAK
Query Conservation   
 
      

 
     
   
 
   

       

  


         
   
 





   
          
Alig confidence 















































































Template Conservation 

 
      

 
     
   
 
   

       

  


            

 





   
          
Template Sequence  KLVTWXNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAK
Template Known Secondary structure 
TT
TT


T
TT


SBTTB


SS
STTS
S
T
S
Template Predicted Secondary structure 











































Template SS confidence 















































































   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
Predicted Secondary structure 












































Query SS confidence 















































































Query Sequence  SRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLTEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLR
Query Conservation    
   

   
 
  


                       
                        

 




  
  
Alig confidence 















































































Template Conservation        

   
 
  


                       
                        



 


  
  
Template Sequence  SRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIXAWEKLTEARLEEVLTAYKADIPLGXIREENDFRISVAGAQEKTALLR
Template Known Secondary structure 
SSTTB
SSSTT





SS


TGGGGT
STT

TT
SS

B


SSS
Template Predicted Secondary structure 












































Template SS confidence 















































































   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  IGNDWCIPKGITPTTHIIKLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNA
Query Conservation                  
 
             
       
     

   

 
    
        
 
 



    
Alig confidence 



















..............













































Template Conservation                  
 
 ..............
     
     

   

 
    
        
 
 



    
Template Sequence  IGNDWCIPKGITPTTHIIKL. . . . . . . . . . . . . . PQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNA
Template Known Secondary structure  TT
TT




..............

TT




TT
SS
T
Template Predicted Secondary structure 













..............


















Template SS confidence 















































































   163......170.........180.. .......190.........200.........210.........220........
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  ERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAG
Query Conservation        
 
 

  
 

     

                          




 


 



 
 
 

 
 
    
Alig confidence 















































































Template Conservation        
   

    

     

             
            

 

 


 



 
 
 

 
 
    
Template Sequence  ERTVLLRLPQEDXCQTFGLPSSVKYESDGGPGIARIXAFLXGSSEALKDRYDFXKFQVFQWLIGATQGHAKNFSVFIQAG
Template Known Secondary structure  TSS


TT

GGG
SGGGT


TTSTTTT




GGG

GG
Template Predicted Secondary structure 

































Template SS confidence 















































































   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   323......330.........340.........350.........360.........370.........380.........390.........400..
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  GSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAA
Query Conservation 
   






                  

                        
   

    
   
      
   
Alig confidence 















































































Template Conservation      


 


                                   
    
   
   

    
  

      
   
Template Sequence  GSYRLTPFYDIISAFPVLGGTGIHISDLKLAXGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQXHEILSDFARXIPAA
Template Known Secondary structure  G








SGGGTTTTS

GGG

SSSGGG

TT

Template Predicted Secondary structure 



























Template SS confidence 















































































   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   403......410.........420.........430.....
Predicted Secondary structure 




Query SS confidence 
































Query Sequence  LDNVKTSLPTDFPENVVTAVESNVLRLHGRLSR
Query Conservation                     
          
  
Alig confidence 
































Template Conservation               
     
         

  
Template Sequence  LDNVKTSLPTDFPENVVTAVESNVLRLHGRLSR
Template Known Secondary structure  TS
TTS
TTS

Template Predicted Secondary structure 

Template SS confidence 
































   403......410.........420.........430.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions