Return to main results Retrieve Phyre Job Id

Job DescriptionP45422
Confidence1.80%DateThu Jan 5 12:02:35 GMT 2012
Rank72Aligned Residues125
% Identity14%Templatec3bwuF_
PDB info PDB header:chaperone, structural, membrane proteinChain: F: PDB Molecule:protein fimf; PDBTitle: crystal structure of the ternary complex of fimd (n-terminal domain,2 fimdn) with fimc and the n-terminally truncated pilus subunit fimf3 (fimft)
Resolution1.76 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70..... .... 80.........90.........100.........110.
Predicted Secondary structure 


















.



.























Query SS confidence 









































.



.































Query Sequence  AAACTPILSNGGVVNFGSHSVNRLSTQHYTQIGTRNINMTIT. CESA. TGIAITARDTRMDSMTTGKDSGGQSGVKYTLN
Query Conservation 
 


  

 

 



 
    

 
  
 
  
   



.


 .
 

    


  
                  
Alig confidence 













..............













.



.












...................
Template Conservation     
 
    
  
..............
       
 
 
  
      
   
 
    ...................
Template Sequence  DNGCSVAAESTNFI. . . . . . . . . . . . . . GATTPVVPFRILLSPCGNAVSAVKVGFTGVADS. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 








..............

B



TT



B
S...................
Template Predicted Secondary structure 







..............

















...................
Template SS confidence 















































































   13......20...... ...30.........40.........50.........
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
Predicted Secondary structure 














































Query SS confidence 















































































Query Sequence  GGGYISQTTRLFGLGKTKDNKNIGSYAVLIDSNNISASNGSQTLAVSIAGADAVITGQKRAWQTLTAYPLAVDQSYYYTF
Query Conservation             





    


 
 
      
 

 
                                      
 
Alig confidence  .....















































...........................
Template Conservation  .....              
 



 
    
  
                  ...........................
Template Sequence  . . . . . HNANLLALENTVSAASGLGIQLLNEQQNQIPLNAPSSALSWTTLTPGK. . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .....S
TTS



TTB
BS
TT

B

TT

GGG



TTS...........................
Template Predicted Secondary structure  .....


























...........................
Template SS confidence 















































































   74.....80.........90.........100.........110.........120.
 
   192.......200.........210.........220.........230.......
Predicted Secondary structure 













Query SS confidence 













































Query Sequence  VKPGETTPTPVTNAIIPLQVSASIANDLGGSEKIELDGKAVISVVY
Query Conservation 
  
   
 
    
  
 
   
   
 


 
 


 




 
Alig confidence  ..............































Template Conservation  ..............   
   
 
      

 
   
  

 
 
Template Sequence  . . . . . . . . . . . . . . PNTLNFYARLMATQVPVTAGHINATATFTLEY
Template Known Secondary structure  ..............
SSSS
B

B




Template Predicted Secondary structure  ..............






Template SS confidence 













































   122.......130.........140.........150...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions