Job Description P33342 Confidence 96.48% Date Wed Jan 25 15:20:50 GMT 2012 Rank 22 Aligned Residues 88 % Identity 15% Template c1z9oB_ PDB info PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif Resolution 1.90 Å

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		35	.	.	.	.		40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure							.								.	.	.
Query SS confidence							.								.	.	.
Query Sequence		I	V	I	Y	G	.	T	R	I	I	Y	P	A	.	.	.	E	N	K	E	V	M	V	Q	L	M	N	Q	G	N	R	S	S	L	L	Q	A	W	I	D	D	G	D	T	S	L	P	P	E	K	I	Q	V	P	F	M	L	T	P	P	V	A	K	I	G	A	N	S	G	Q	Q	V	K	I	K	I	M	P	N	K
Query Conservation							.								.	.	.
Alig confidence							.								.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	L	D	P	P	S	D	L	K	F	K	G	P	F	T	D	V	V	T	T	N	L	K	L	Q	N	P	S	D	R	K	V	C	F	K	V	K	T	T	A	P	R	R	.	.	.	.	.	.	.	.	.	.	Y	C	V	R	P	N	S	G	V	I	D	P	G	S	I	V	T	V	S	V	M	L	Q	P	F	D
Template Known Secondary structure		S				S	S	S						S			S	S												S	S	S									S		G	G	G	.	.	.	.	.	.	.	.	.	.					S	S						T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.											.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	T	N	K	E	S	I	F	Y	L	N	V	L	D	I	P	P	N	S	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	P	N	E	K	S	K	H	K	F	M	V	Q	T	I	F	A	P	P	S	D
Template Known Secondary structure				T	T	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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