Job Description Q46896 Confidence 100.00% Date Thu Jan 5 12:35:36 GMT 2012 Rank 5 Aligned Residues 215 % Identity 17% Template c3pv9D_ PDB info PDB header:immune system Chain: D: PDB Molecule:putative uncharacterized protein ph1245; PDBTitle: structure of ph1245, a cas1 from pyrococcus horikoshii Resolution 2.85 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		R	V	S	M	I	F	L	Q	Y	G	Q	I	D	V	I	D	G	A	F	V	L	I	D	K	T	G	I	R	T	H	I	P	V	G	S	V	A	C	I	M	L	E	P	G	T	R	V	S	H	A	A	V	R	L	A	A	Q	V	G	T	L	L	V	W	V	G	E	A	G	V	R	V	Y	A	S	G	Q	P	G	.
Query Conservation																																																																																	.
Alig confidence																														.																																																			.
Template Conservation																														.
Template Sequence		K	K	P	L	T	I	F	S	D	G	T	L	T	R	R	E	N	T	L	Y	F	E	S	A	K	G	R	K	.	P	L	A	I	E	G	I	Y	D	I	Y	I	Y	G	H	V	N	I	T	S	Q	A	L	H	Y	I	A	Q	K	G	I	L	I	H	F	F	N	H	Y	G	Y	Y	D	G	T	F	Y	P	R	E	T
Template Known Secondary structure									S								S	S	S					S	S	S				.				G	G	G								S															T	T								S	S	S											S
Template Predicted Secondary structure																														.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	R	S	D	K	L	L	Y	Q	A	K	L	A	L	D	E	D	L	R	L	K	V	V	R	K	M	F	E	L	R	F	G	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	A	R	R	S	V	E	Q	L	R	G	I	E	G	S	R	V	R	A	T	Y	A	L	L	A
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																																																																	.
Template Sequence		L	L	S	G	D	L	I	I	R	Q	A	E	H	Y	L	N	K	E	K	R	L	F	L	A	K	S	F	V	T	G	G	T	K	N	M	E	R	N	L	K	N	W	G	I	K	A	K	L	S	D	Y	L	D	E	L	N	D	A	R	K	I	T	E	I	M	N	V	E	A	R	I	R	Q	E	Y	Y	A	K	W	.
Template Known Secondary structure					S	S											S																										T	T						G	G	G					T	T			S																T		S		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		K	Q	Y	G	V	T	W	N	G	R	R	Y	D	P	K	D	W	E	K	G	D	T	I	N	Q	C	I	S	A	A	T	S	C	L	Y	G	V	T	E	A	A	I	L	A	A	G	Y	A	P	A	I	G	F	V	H	T	G	K	P	L	.	.	S	F	V	Y	D	I	A	D	I	I	K	F	D	T	V	V	P	K
Query Conservation																																																														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	N	L	P	K	N	E	M	N	A	L	I	S	F	L	N	S	R	L	Y	A	T	I	I	T	E	I	Y	N	T	Q	L	A	P	T	I	S	Y	L	H	E	P	S	E	R	R	F	S	L	S	L	D	L	S	E	I	F	K	P	I	I	A	D	R	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					S																							T	S	S	S		S	S			S	S	S			B	T	T	B															T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	E	I	A	R	R	N	P	G	E	P	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	R	L	V	K	K	G	S	L	K	K	E
Template Known Secondary structure							T	T	T	S			G	G
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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