Job Description Q46896 Confidence 100.00% Date Thu Jan 5 12:35:36 GMT 2012 Rank 3 Aligned Residues 239 % Identity 18% Template c3lfxE_ PDB info PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima Resolution 2.70 Å

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		16	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure							.																																																																										.
Query SS confidence							.																																																																										.
Query Sequence		S	M	I	F	L	.	Q	Y	G	Q	I	D	V	I	D	G	A	F	V	L	I	D	K	T	G	I	R	T	H	I	P	V	G	S	V	A	C	I	M	L	E	P	G	T	R	V	S	H	A	A	V	R	L	A	A	Q	V	G	T	L	L	V	W	V	G	E	A	G	V	R	V	Y	A	S	G	Q	P	G	G	.
Query Conservation							.																																																																										.
Alig confidence							.																						.																																																				.
Template Conservation																													.
Template Sequence		E	S	V	Y	L	F	S	S	G	T	L	K	R	K	A	N	T	I	C	L	E	T	E	S	G	R	K	.	Y	I	P	V	E	N	V	M	D	I	K	V	F	G	E	V	D	L	N	K	R	F	L	E	F	L	S	Q	K	R	I	P	I	H	F	F	N	R	E	G	Y	Y	V	G	T	F	Y	P	R	E	Y	L
Template Known Secondary structure								S								S	S							S	S				.					T	T								S															T	T								T	T	S									S	S		S
Template Predicted Secondary structure																													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	S	D	K	L	L	Y	Q	A	K	L	A	L	D	E	D	L	R	L	K	V	V	R	K	M	F	E	L	R	F	G	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	A	R	R	S	V	E	Q	L	R	G	I	E	G	S	R	V	R	A	T	Y	A	L	L	A
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	S	G	F	L	I	L	K	Q	A	E	H	Y	I	N	Q	E	K	R	M	L	I	A	R	E	I	V	S	R	S	F	Q	N	M	V	D	F	L	K	K	R	K	V	R	A	D	S	L	T	R	Y	K	K	K	A	E	E	A	S	N	V	S	E	L	M	G	I	E	G	N	A	R	E	E	Y	Y	S	M	I	D
Template Known Secondary structure																S																										T	T				G	G	G												S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		154	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure								.																																																							.	.
Query SS confidence								.																																																							.	.
Query Sequence		K	Q	Y	G	V	T	.	W	N	G	R	R	Y	D	P	K	D	W	E	K	G	D	T	I	N	Q	C	I	S	A	A	T	S	C	L	Y	G	V	T	E	A	A	I	L	A	A	G	Y	A	P	A	I	G	F	V	H	T	G	K	P	L	.	.	S	F	V	Y	D	I	A	D	I	I	K	F	D	T	V	V	P
Query Conservation								.																																																							.	.
Alig confidence								.						.	.																																																.	.
Template Conservation														.	.
Template Sequence		S	L	V	S	D	E	R	F	R	I	E	K	.	.	R	T	R	R	P	P	K	N	F	A	N	T	L	I	S	F	G	N	S	L	L	Y	T	T	V	L	S	L	I	Y	Q	T	H	L	D	P	R	I	G	Y	L	H	E	T	N	F	R	R	F	S	L	N	L	D	I	A	E	L	F	K	P	A	V	V	D	R
Template Known Secondary structure		T	T			S	G	G	G					.	.			S	S			S	S																							T	S	S			T	T			S	S	S			S	S	S	S												T	T	T	T
Template Predicted Secondary structure														.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.										.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	F	E	I	A	R	R	N	P	G	E	P	D	R	.	.	.	.	.	.	.	.	.	E	V	R	L	A	C	R	D	I	F	R	S
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	L	N	L	V	N	T	R	Q	I	N	E	K	H	F	D	E	I	L	M	L	N	D	E	G	K	S	L	F	V	K	N	Y	E	Q
Template Known Secondary structure									T	T	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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