Job Description Q46896 Confidence 100.00% Date Thu Jan 5 12:35:36 GMT 2012 Rank 2 Aligned Residues 264 % Identity 25% Template c3godA_ PDB info PDB header:immune system Chain: A: PDB Molecule:cas1; PDBTitle: structural basis for dnase activity of a conserved protein2 implicated in crispr-mediated antiviral defense Resolution 2.17 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		P	L	N	P	I	P	L	K	D	R	V	S	M	I	F	L	Q	Y	G	Q	I	D	V	I	D	G	A	F	V	L	I	D	K	T	G	I	R	T	.	.	.	H	I	P	V	G	S	V	A	C	I	M	L	E	P	G	T	R	V	S	H	A	A	V	R	L	A	A	Q	V	G	T	L	L	V	W	V	G	E	A
Query Conservation																																								.	.	.
Alig confidence																																								.	.	.
Template Conservation
Template Sequence		E	L	K	T	I	L	H	S	K	R	A	N	L	Y	Y	L	Q	H	C	R	V	L	V	N	G	G	R	V	E	Y	V	T	D	E	G	R	H	S	H	Y	W	N	I	P	I	A	N	T	T	S	L	L	L	G	T	G	T	S	I	T	Q	A	A	X	R	E	L	A	R	A	G	V	L	V	G	F	C	G	G	G
Template Known Secondary structure										T									S							T	T									T	T									G	G	G								T	T														T	T								S	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90												.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	R	V	Y	A	S	G	Q	.	.	.	.	.	.	.	.	.	.	.	P	G	G	A	R	S	D	K	L	L	Y	Q	A	K	L	A	L	D	E	D	L	R	L	K	V	V	R	K	M	F	E	L	R	F	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	P	L	F	S	A	N	E	V	D	V	E	V	S	W	L	T	P	Q	S	E	Y	R	P	T	E	Y	L	Q	R	W	V	G	F	W	F	D	E	E	K	R	L	V	A	A	R	H	F	Q	R	A	R	L	E	R	I	R	H	S	W	L	E	D	R	V	L	R	D	A	G	F	A	V	D	A	T	A	L	A
Template Known Secondary structure		T			S				T	T				S							S	S	S				S											T																																	T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
										127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	P	A	P	A	R	R	S	V	E	Q	L	R	G	I	E	G	S	R	V	R	A	T	Y	A	L	L	A	K	Q	Y	G	V	T	W	N	G	R	R	Y	D	P	K	D	W	E	K	G	D	T	I	N	Q	C	I	S	A	A	T	S	C	L	Y	G	V	T	E	A	A	I	L	A	A
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																						.	.	.
Template Conservation																																															.	.	.
Template Sequence		V	A	V	E	D	S	A	R	A	L	E	Q	A	P	N	H	E	H	L	L	T	E	E	A	R	L	S	K	R	L	F	K	L	A	A	Q	A	T	R	Y	G	E	F	V	R	.	.	.	A	K	R	G	S	G	G	D	P	A	N	R	F	L	D	H	G	N	Y	L	A	Y	G	L	A	A	T	A	T	W	V	L
Template Known Secondary structure													T			S																							T	T			S				.	.	.		S	T	T				S																								T
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		G	Y	A	P	A	I	G	F	V	H	T	G	K	P	L	.	S	F	V	Y	D	I	A	D	I	I	K	F	D	T	V	V	P	K	A	F	E	I	A	R	R	N	P	G	E	P	D	R	E	V	R	L	A	C	R	D	I	F	R	S	S	K	T	L	A	K	L	I	P	L	I	E	D	V	L	A
Query Conservation																	.
Alig confidence																	.																											.	.
Template Conservation																																												.	.
Template Sequence		G	I	P	H	G	L	A	V	L	H	G	K	T	R	R	G	G	L	V	F	D	V	A	D	L	I	K	D	S	L	I	L	P	Q	A	F	L	S	A	X	R	G	.	.	D	E	E	Q	D	F	R	Q	A	C	L	D	N	L	S	R	A	Q	A	L	D	F	X	I	D	T	L	K	D	V	A	Q
Template Known Secondary structure		T			T	T			S	S	S	T	T	T		T	T								T	T	T	T	T	T	T												T	.	.																	T	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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