Job Description Q46861 Confidence 99.71% Date Wed Jan 25 15:21:13 GMT 2012 Rank 7 Aligned Residues 200 % Identity 17% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

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		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	A	Y	E	M	I	R	F	S	V	N	I	M	R	G	C	F	G	G	C	S	F	C	S	I	T	E	H	E	G	R	I	I	Q	S	R	S	E	D	S	I	I	N	E	I	E	A	I	R	D	T	V	P	G	F	T	G	V	I	S	D	L	G	G	P	T	A	N	M	Y	M	L	R	C	K	S	P	R	A
Query Conservation
Alig confidence																															.				.																											.	.	.	.
Template Conservation																															.				.																											.	.	.	.
Template Sequence		I	P	E	D	D	R	A	T	L	C	V	S	S	Q	V	G	C	A	L	E	C	K	F	C	S	T	A	Q	Q	.	G	F	N	.	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	.	.	.	.	Q	R	P	I	T	N	V	V	M	M	G	M	G	E	P	L
Template Known Secondary structure					S	S													S	S			T	T		G	G	G	T	T	.				.																										S	.	.	.	.	S		S		S						S	S	S		G	G
Template Predicted Secondary structure																															.				.																											.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.					.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		E	Q	T	C	R	R	L	S	C	V	Y	P	D	I	C	P	H	M	D	T	N	H	E	P	T	I	N	L	Y	R	R	A	R	D	L	K	G	I	K	.	.	.	.	K	I	L	I	A	S	G	V	R	Y	D	I	A	V	E	D	P	R	Y	I	K	E	L	A	T	H	H	V	G	G	Y	L	K	I	A	P	E
Query Conservation																																									.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.							.	.	.	.	.	.	.												.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.												.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	.	.	.	.	.	.	.	S	G	V	V	P	A	L	D	K	L	G	.	D	M	I	D	V	A	L	A	I	S	L	H
Template Known Secondary structure		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S	T	T	T	T				G	G	G						.	.	.	.	.	.	.	S											.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.												.
Template SS confidence
		183																				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.								.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.
		526	.	.	.	530	.	.	.	.				.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.				560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.																										.	.	.
Query SS confidence											.	.	.																										.	.	.
Query Sequence		H	T	E	E	G	P	L	S	K	.	.	.	M	M	K	P	G	M	G	S	Y	D	R	F	K	E	L	F	D	T	Y	S	K	Q	A	G	K	.	.	.	E	Q	Y	L	I	P	Y	F	I	S	A	H	P	G	T	R	D	E	D	M	V	N	L	A	L	W	L	K	K	H	R	F	R	L	D	Q	V	Q	N	F
Query Conservation											.	.	.																										.	.	.
Alig confidence											.	.	.				.	.																					.	.	.												.																					.
Template Conservation																	.	.																																			.																					.
Template Sequence		A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	.	.	K	Y	N	I	E	T	F	L	A	A	V	R	R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	.	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	.	K	I	N	L	I	P	W
Template Known Secondary structure			S	S								S	G	G	G	G	.	.	T	S																	T	T	T	T	T									B	T	T	.	T	T		S											T	T	T	S			.
Template Predicted Secondary structure																	.	.																																			.																					.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.
		600	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	S	P	L	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	P	F	P	G	A	P
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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