Job Description Q46861 Confidence 37.82% Date Wed Jan 25 15:21:13 GMT 2012 Rank 62 Aligned Residues 90 % Identity 23% Template c3cuqA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.61 Å

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		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.		.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.					.	.	.	.	570	.	.
Predicted Secondary structure																																										.																													.	.	.	.
Query SS confidence																																										.																													.	.	.	.
Query Sequence		Y	D	I	A	V	E	D	P	R	Y	I	K	E	L	A	T	H	H	V	G	G	Y	L	K	I	A	P	E	H	T	E	E	G	P	L	S	K	M	M	K	.	P	G	M	G	S	Y	D	R	F	K	E	L	F	D	T	Y	S	K	Q	A	G	K	E	Q	Y	L	I	P	.	.	.	.	Y	F	I	S	A	H	P
Query Conservation																																										.																													.	.	.	.
Alig confidence															.	.									.																	.																	.												.	.	.	.
Template Conservation															.	.									.																																		.
Template Sequence		Y	E	L	G	V	Q	I	I	E	V	C	L	A	.	.	L	K	H	R	N	G	G	L	.	I	T	L	E	E	L	H	Q	Q	V	L	K	G	R	G	K	F	A	Q	D	V	S	Q	D	D	L	I	R	A	I	K	K	L	.	K	A	L	G	T	G	F	G	I	I	P	V	G	G	T	Y	L	I	Q	S	V	P
Template Known Secondary structure															.	.						S	S		.													T	T	T	T			S	S														.	G	G	G	S	T	T							T	T							S
Template Predicted Secondary structure															.	.									.																																		.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	R	D	E	D	M	V	N	L	A	L	W	L	K	K	H	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	L	N	M	D	H	T	V	V	L	Q	L	A	E	K	N	G	Y
Template Known Secondary structure																T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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