Job Description Q46861 Confidence 100.00% Date Wed Jan 25 15:21:13 GMT 2012 Rank 1 Aligned Residues 222 % Identity 18% Template c2qgqF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	S	F	C	S	I	T	E	H	E	G	R	I	I	Q	S	R	S	E	D	S	I	I	N	E	I	E	A	I	R	D	T	V	P	G	F	T	G	V	I	S	D	L	G	G	P	T	A	N	M	Y	M	L	R	C	K	S	P	R	A	E	Q	T	C	R	R	L	S	C	V	Y	P	D	I	C	P	H	M	D	T
Query Conservation
Alig confidence															.																											.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																											.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	P	Y	A	Y	V	K	I	S	D	G	S	L	.	R	S	R	S	I	E	D	I	T	R	E	V	E	D	L	L	K	E	G	K	K	E	I	I	L	V	.	.	.	.	A	Q	D	T	T	S	Y	G	I	D	L	Y	R	K	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S							B					.		B																T	T								.	.	.	.		S		G	G	G	T	T	T	T	T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.																											.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	E	P	T	I	N	L	Y	R	R	A	R	D	L	K	G	I	K	K	I	L	I	A	S	G	V	R	Y	D	I	A	V	E	D	P	R	Y	I	K	E	L	A	T	H	H	V	G	G	Y	L	K	I	A	P	E	H	T	E	E	G	P	L	S	K	M	M	K	P	G	M	G	S	Y	D	R	F	K	E	L
Query Conservation
Alig confidence		.	.	.	.																																						.	.																										.	.
Template Conservation		.	.	.	.																																						.	.																										.	.
Template Sequence		.	.	.	.	L	P	D	L	L	R	R	L	N	S	L	N	G	E	F	W	I	R	V	X	Y	L	H	P	D	H	L	T	E	E	I	I	S	A	X	L	E	.	.	L	D	K	V	V	K	Y	F	D	V	P	V	Q	H	G	S	D	K	I	L	K	L	X	G	R	.	.	T	K	S	S	E	E	L	K	K	X
Template Known Secondary structure		.	.	.	.										T	S	S	S	S										G	G	G												.	.		T	T	B		S							B		S									T		.	.		S
Template Predicted Secondary structure		.	.	.	.																																						.	.																										.	.
Template SS confidence
						207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	T	Y	S	K	Q	A	G	K	E	Q	Y	L	I	P	Y	F	I	S	A	H	P	G	T	R	D	E	D	M	V	N	L	A	L	W	L	K	K	H	R	F	R	L	D	Q	V	Q	N	F	Y	P	S	P	L	A	N	S	T	T	M	Y	Y	T	G	K	N	P	L	A	K	I	G	Y	K	S	E	D	V	F
Query Conservation
Alig confidence										.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	S	I	R	E	R	F	.	P	D	A	V	L	R	T	S	I	I	V	G	F	P	G	E	T	E	E	D	F	E	E	L	K	Q	F	V	E	E	I	Q	F	D	K	L	G	A	F	V	Y	S	D	K	V	D	P	E	X	A	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.	T	T										S		T	T																			S																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	K	G	D	K	Q	R	R	L	H	K	A	L	L	R	Y	H	D	P	A	N	W	P	L	I	R	Q	A	L	E	A	M	G	K	K	H	L	I	G	S	R	R	D	C	L	V	P	A	P	T	I	E
Query Conservation
Alig confidence		.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	R	Q	E	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	L	Q	A	E	I	S	N	S	R	L	D	R	F	V	G	K	K	L	K	F	L	V	E	G	K	E	G	K
Template Known Secondary structure		.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	B	T												T	T
Template Predicted Secondary structure		.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							350	.	.	.	.														.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions