Job Description Q46861 Confidence 35.73% Date Wed Jan 25 15:21:13 GMT 2012 Rank 69 Aligned Residues 150 % Identity 11% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.				.	.		.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.			.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.			.																									.	.
Query SS confidence																												.	.	.			.																									.	.
Query Sequence		F	K	E	L	F	D	T	Y	S	K	Q	A	G	K	E	Q	Y	L	I	P	Y	F	I	S	A	H	.	.	.	P	G	.	T	R	D	E	D	M	V	N	L	A	L	W	L	K	K	H	R	F	R	L	D	Q	V	Q	.	.	N	F	Y	P	S	P	L	A	N	S	T	T	M	Y	Y	T	G	K	N	P	L	A
Query Conservation																												.	.	.			.																									.	.
Alig confidence																												.	.	.			.																									.	.														.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	T	T	S											S	S		T	T	S			T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.									.	680	.	.	.	.	.	.	.	.	.	690	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.
Query Sequence		K	I	G	Y	K	S	E	D	V	F	V	P	K	G	D	K	Q	R	R	L	H	K	A	L	L	R	Y	H	D	P	A	N	W	P	L	I	R	Q	A	L	E	A	M	G	K	K	H	L	I	G	S	R	R	D	C	L	V	P	A	.	.	.	.	.	.	.	.	P	T	I	E	E	M	R	E	A	R	R	Q	N
Query Conservation																																																													.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																																									.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	K	K	P	V	L	G	V	G	R	Y	T	D	P	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I	G	C	A	R	P	S	I	A	D	P	F	L	P	Q	K	V	E	Q	G	R	Y	D	D	I	R	V	C	I	G	C	N
Template Known Secondary structure		.	.	.	T			T	T	T	T									T	T		S	S						S														T	T	S		S	B				S							T	T							T	T		G	G	G
Template Predicted Secondary structure		.	.	.
Template SS confidence
					273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		692	.								.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence		R	N	.	.	.	.	.	.	.	T	R	P	A	L	T	K	H	T	P	M	A	T	Q
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	C	I	S	R	W	E	I	G	G	P	P	M	I	C	T	Q	N	A	T	A	G	E
Template Known Secondary structure										S	S	S					S	S		T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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