Phyre 2 alignment of P0A6S7 with c3l6dB

Job Description P0A6S7
Confidence 99.96% Date Thu Jan 5 11:03:50 GMT 2012

Rank 38 Aligned Residues 283

% Identity 19% Template c3l6dB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence	M	N	Q	R	N	A	S	M	T	V	I	G	A	G	S	Y	G	T	A	L	A	I	T	L	A	R	N	G	H	E	V	V	L	W	G	H	D	P	E	H	I	A	T	L	E	R	D	R	C	N	A	A	F	L	P	D	V	P	F	P	D	T	L	H	L	E	S	D	L	A	T	A	L	A	A	S	R	N	I	L
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	E	S	F	E	F	D	V	S	V	I	G	L	G	A	X	G	T	I	X	A	Q	V	L	L	K	Q	G	K	R	V	A	I	W	N	R	S	P	G	K	A	A	A	L	V	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	L	C	E	S	V	K	A	A	L	S	A	S	P	A	T	I
Template Known Secondary structure	G	G	G		S		S							S													T	T								S											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S								S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.															.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70

	81	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence	V	V	V	P	S	.	H	V	F	G	E	V	L	R	Q	I	K	P	L	M	R	P	D	A	R	L	V	W	A	T	K	G	L	E	A	E	T	G	R	L	L	Q	D	V	A	R	E	A	L	G	D	Q	I	P	L	A	V	I	S	G	P	T	F	A	K	E	L	A	A	G	L	P	T	A	I	S	L	A	S	T
Query Conservation						.
Alig confidence						.																																																												.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence	F	V	L	L	D	N	H	A	T	H	E	V	L	G	X	P	G	V	A	R	A	L	A	H	R	T	I	V	D	Y	T	T	N	A	Q	D	E	G	L	A	L	Q	G	L	V	N	Q	A	G	G	H	Y	V	K	G	X	I	V	A	Y	P	R	N	V	G	.	.	.	.	.	H	R	E	S	H	S	I	H	T	G
Template Known Secondary structure				S	S										S	T	T						T	T							S																	T	T										S		G	G	G	T	T	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
	71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	Q	T	F	A	D	D	L	Q	Q	L	L	H	C	G	K	S	F	R	V	Y	S	N	P	D	F	I	G	V	Q	L	G	G	A	V	K	N	V	I	A	I	G	A	G	M	S	D	G	I	G	F	G	A	N	A	R	T	A	L	I	T	R	G	L	A	E	M	S	R	L	G	A	A	L	G	A	D	P	A	T
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	R	E	A	F	E	Q	H	R	A	L	L	E	G	L	A	G	H	T	V	F	L	P	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	A	L	A	F	A	T	V	L	H	A	H	A	F	A	A	X	V	T	F	F	E	A	V	G	A	G	D	R	F	G	L	P	V	S	K
Template Known Secondary structure								T					T	T	T		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure						.	.																																																																									.
Query SS confidence						.	.																																																																									.
Query Sequence	F	M	G	M	A	.	.	G	L	G	D	L	V	L	T	C	T	D	N	Q	S	R	N	R	R	F	G	M	M	L	G	Q	G	M	D	V	Q	S	A	Q	E	K	I	G	Q	V	V	E	G	Y	R	N	T	K	E	V	R	E	L	A	H	R	F	G	V	E	M	P	I	T	E	E	I	Y	Q	V	L	Y	C	.
Query Conservation						.	.																																																																									.
Alig confidence						.	.																																			.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.
Template Sequence	T	A	R	L	L	L	E	T	S	R	F	F	V	A	D	A	L	E	E	A	V	R	R	L	E	T	Q	D	F	K	G	D	Q	A	R	L	D	V	H	A	D	.	.	.	.	.	.	.	.	.	.	A	F	A	H	I	A	Q	S	L	H	A	Q	G	V	W	T	P	V	F	D	A	V	C	Q	V	V	Q	R	A
Template Known Secondary structure																											T				T	T	S	S	B							.	.	.	.	.	.	.	.	.	.													T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.											.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

						317	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure	.	.	.	.	.
Query SS confidence	.	.	.	.	.
Query Sequence	.	.	.	.	.	G	K	N	A	R	E	A	A	L	T	L	L	G	R	A
Query Conservation	.	.	.	.	.
Alig confidence	.	.	.	.	.
Template Conservation
Template Sequence	A	A	X	G	Y	G	D	Q	D	I	A	A	T	T	K	S	F	A	R	E
Template Known Secondary structure			T	T	T	T	T	S	B	G	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
	277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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